URL: https://github.com/Hawaii-Bioinformatics/ViralEmbed
Proper Citation: ViralEmbed (RRID:SCR_027596)
Description: Software tool as deep learning framework for analyzing viral protein sequences at genomic scale using transformer-based models with sparse attention mechanisms. The tool processes complete viral genomes (up to 61,000 amino acids) to predict protein-protein interactions and identify functional relationships between viral proteins through attention-based contact analysis.
Resource Type: software application, software resource, source code
Defining Citation: PMID:40501585
Keywords: analyzing viral protein sequences, genomic scale, transformer-based models, complete viral genomes, predict protein-protein interactions,
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