URL: https://github.com/steineggerlab/foldseek
Proper Citation: Foldseek (RRID:SCR_027018)
Description: Software tool for fast and sensitive comparisons of large structure sets. Used for comparisons of large protein structure sets, supporting monomer and multimer searches, as well as clustering. It runs on CPU, supports GPU acceleration for faster searches, and optionally allows ultra-fast and sensitive comparisons directly from protein sequence inputs using a language model, bypassing the need for structures.
Resource Type: software application, software resource, source code
Keywords: comparisons of large structure sets, protein structure sets, monomer and multimer searches, clustering
Availability: Free, Available for download, Freely available
Resource Name: Foldseek
Resource ID: SCR_027018
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
