URL: https://github.com/nf-core/rnaseq
Proper Citation: rnaseq (RRID:SCR_026973)
Description: Software RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. Can be used to analyse RNA sequencing data obtained from organisms with reference genome and annotation. It takes a samplesheet and FASTQ files as input, performs quality control (QC), trimming and (pseudo-)alignment, and produces a gene expression matrix QC report.
Synonyms: nf-core/rnaseq
Resource Type: software resource, software toolkit, source code
Keywords: RNA sequencing, sequencing analysis, organisms, data, reference genome, annotation,
Availability: Free, Available for download, Freely available
Resource Name: rnaseq
Resource ID: SCR_026973
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
