URL: https://github.com/pjedge/longshot
Proper Citation: longshot (RRID:SCR_025318)
Description: Software variant calling tool for diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). Enables accurate variant calling in diploid genomes from single-molecule long read sequencing. Takes as input aligned BAM/CRAM file and outputs phased VCF file with variants and haplotype information.
Resource Type: software resource, source code
Defining Citation: DOI:10.1038/s41467-019-12493-y
Keywords: variant calling, diploid genomes, long error prone reads, single molecule long read sequencing,
Funding: NHGRI R01 HG010149
Availability: Free, Available for download, Freely available
Resource Name: longshot
Resource ID: SCR_025318
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
