Proper Citation: PLUMED 2 (RRID:SCR_021952)
Description: Open source, community developed library that provides range of different methods, which include enhanced sampling algorithms, free energy methods, tools to analyze vast amounts of data produced by molecular dynamics simulations. PLUMED 2 is complete rewrite of the code in object oriented programming language C plus plus. This new version introduces greater flexibility and greater modularity, which both extends its core capabilities and makes it far easier to add new methods and CVs. It also has simpler interface with the MD engines and provides single software library containing both tools and core facilities.
Synonyms: PLUgin for MolEcular Dynamics 2
Resource Type: software library, software resource, software toolkit
Defining Citation: DOI:10.1016/j.cpc.2013.09.018
Keywords: Molecular dynamics analysis, enhanced sampling algorithms, free energy methods, PLUMED
Funding: CeCAM ; European Research Council ; Marie Curie Intra European Fellowship ; MIUR grant FIRB ; SISSA
Availability: Free, Available for download, Freely available
Resource Name: PLUMED 2
Resource ID: SCR_021952
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
