URL: https://broadinstitute.github.io/warp/docs/Pipelines/CEMBA_MethylC_Seq_Pipeline/README
Proper Citation: CEMBA MethylC Seq Pipeline (RRID:SCR_021219)
Description: Software pipeline that supports processing of multiplexed single nuclei bisulfite sequencing data to detect methylated bases. Alignment and methylated base calling pipeline that trims adaptors, attaches cell barcodes, aligns reads to genome, filters reads based on quality and creates both VCF and ALLC file with Emethylation site coverage.
Synonyms: Center for Epigenomics of the Mouse Brain Atlas MethylC Seq Pipeline, CEMBA, MethylC-Seq Pipeline
Resource Type: software resource, data processing software, software application
Keywords: Multiplexed single nuclei bisulfite, sequencing data, adaptor trimming, cell barcodes attaching, aligns reads to genome, filtering reads based on quality, creating VCF and ALLC file with methylation site coverage, methylated base calling, alignment pipeline, Center for Epigenomics of the Mouse Brain Atlas
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