URL: https://github.com/bahanonu/ciatah
Proper Citation: calciumImagingAnalysis (RRID:SCR_021153)
Description: Software package for analyzing one and two photon calcium imaging datasets.Can be used to create GUI-less, command line ready analysis pipelines. Supports Neurodata Without Borders data standard for reading/writing cell-extraction (e.g. outputs of PCA-ICA, CELLMax, CNMF, CNMF-E, EXTRACT, etc.). Supports reading and writing NWB movie files with continued integration planned. Supports most major imaging movie file formats: HDF5, NWB, AVI, ISXD [Inscopix], and TIFF.
Synonyms: CIAtah
Resource Type: software application, data analysis software, data processing software, software toolkit, software resource
Keywords: Photon calcium imaging datasets analysis, command line ready analysis pipelines, Neurodata Without Borders data standard
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