URL: https://github.com/chhylp123/hifiasm
Proper Citation: Hifiasm (RRID:SCR_021069)
Description: Software tool as haplotype resolved de novo assembler for PacBio Hifi reads. Can assemble human genome in several hours.Introduces new graph binning algorithm and achieves haplotype resolved assembly given trio data. Takes advantage of long high fidelity sequence reads to represent haplotype information in phased assembly graph. Preserves contiguity of all haplotypes.
Resource Type: data analysis software, data processing software, sequence analysis software, software application, software resource
Defining Citation: PMID:33526886
Keywords: PacBio Hifi reads, haplotype resolved de novo assembler, trio data, long high fidelity sequence reads,
Funding: NHGRI R01 HG010040; NHGRI U01 HG010961; NHGRI U41HG010972
Availability: Free, Available for download, Freely available
Resource Name: Hifiasm
Resource ID: SCR_021069
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
