URL: https://github.com/oushujun/LTR_retriever
Proper Citation: LTR_retriever (RRID:SCR_017623)
Description: Software package for identification of long terminal repeat retrotransposons (LTR-RTs). Removes false positives from initial software predictions. Achieves very high specificity, accuracy, and precision without significantly sacrificing sensitivity, hence significantly outperforming existing methods. Can construct LTR libraries directly from self-corrected PacBio reads prior to genome assembly.
Synonyms: Long Terminal Repeat retriver
Resource Type: data processing software, software application, software resource
Defining Citation: PMID:29233850
Keywords: Identification, long, terminal, repeat, retrotransponson, remove, false, positive, prediction, LTR, library, PacBio, read
Funding: NSF ; United States Department of Agriculture National Institute of Food and Agriculture and AgBioResearch at Michigan State University
Availability: Free, Available for download, Freely available
Resource Name: LTR_retriever
Resource ID: SCR_017623
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Source: SciCrunch Registry (RRID:SCR_005400)
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