URL: http://sourceforge.net/projects/bbmap
Proper Citation: BBmap (RRID:SCR_016965)
Description: Software tool as a short read aligner for DNA and RNA seq data. Used for large genomes with millions of scaffolds. Can align reads from Illumina, PacBio, 454, Sanger, Ion Torrent, Nanopore. Fast and accurate, particularly with highly mutated genomes or reads with long indels, even whole gene deletions over 100kbp long. It has no upper limit to genome size or number of contigs. Written in Java, can run on any platform.
Resource Type: software resource, alignment software, data processing software, software toolkit, software application, image analysis software
Keywords: Joint Genome Institute, short, read, aligner, DNA, RNA, sequencing, data, large, genome, scaffold, mutated, long, indel
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