URL: https://hub.docker.com/r/mziemann/tallyup/
Proper Citation: Digital Expression Explorer 2 Docker Image (RRID:SCR_016931)
Description: Docker image that is used to process all of the data present in the Digital Expression Explorer 2 dataset. It can be freely used by anyone to process data on NCBI SRA or process their own RNA-seq fastq files. Used for bulk reprocessing of public RNA-seq data from SRA. The pipeline tallies the reads assigned to each gene or transcript.
Resource Type: software resource, data processing software, software application
Defining Citation: DOI:10.5281/zenodo.1561840
Keywords: transcriptome, pipeline, bulk, reprocess, public, RNAseq, data, SRA, gene, read
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Source: SciCrunch Registry
