URL: http://ccg.vital-it.ch/snp2tfbs
Proper Citation: SNP2TFBS (RRID:SCR_016885)
Description: Collection of text files providing specific annotations for human single nucleotide polymorphisms (SNPs), namely whether they are predicted to abolish, create or change the affinity of one or several transcription factor (TF) binding sites. Used to investigate the molecular mechanisms underlying regulatory variation in the human genome. SNP2TFBS is also accessible over a web interface, enabling users to view the information provided for an individual SNP, to extract SNPs based on various search criteria, to annotate uploaded sets of SNPs or to display statistics about the frequencies of binding sites affected by selected SNPs.
Abbreviations: SNP2TFBS
Synonyms: Single Nucleotide Polymorphisms 2 Transcription Factor Binding Site, SNP2TFBS
Resource Type: data access protocol, data or information resource, database, software resource, web service
Defining Citation: PMID:27899579
Keywords: collection, regulatory, single, polymorphism, SNP, affecting, predicted, transcription, factor, binding, site, affinity, data, human, nucleotide, genome
Funding: Swiss Institute of Bioinformatics ; Swiss National Science Foundation
Availability: Free, Freely available
Resource Name: SNP2TFBS
Resource ID: SCR_016885
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
