URL: http://bio.math.berkeley.edu/eXpress/index.html
Proper Citation: eXpress (RRID:SCR_006873)
Description:
THIS RESOURCE IS NO LONGER IN SERVICE. Documented January 29, 2018.
From website: "Note that the eXpress software is also no longer being developed. We recommend you use kallisto instead." Kallisto can be found at http://pachterlab.github.io/kallisto/.
Software for streaming quantification for high-throughput DNA/RNA sequencing.
Can be used in any application where abundances of target sequences need to be estimated from short reads sequenced from them.
Abbreviations: eXpress
Synonyms: eXpress - Streaming quantification for high-throughput sequencing, Berkeley-express
Resource Type: data analysis software, data processing software, sequence analysis software, software application, software resource
Defining Citation: DOI:10.1038/nmeth.2251
Keywords: quantification, high-throughput, DNA, RNA, sequencing, target, fragment, analysis
Funding: NHGRI R01HG006129; NSF
Availability: THIS RESOURCE IS NO LONGER IN SERVICE
Resource Name: eXpress
Resource ID: SCR_006873
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
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