Resource Name

Segmentation of Hippocampus Subfields

RRID:SCR_005996 RRID Copied

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Segmentation of Hippocampus Subfields (RRID:SCR_005996)

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URL: http://freesurfer.net/fswiki/HippocampalSubfieldSegmentation

Proper Citation: Segmentation of Hippocampus Subfields (RRID:SCR_005996)

Description: A software package for automatic segmentation of hippocampal subfields in magnetic resonance imges. Given a pair of T1-weighted and T2-weighted images (the latter acquired using a protocol tuned for hippocampus imaging), ASHS will automatically label main subfields of the hippocampus, and some extra-hippocampal structures, using multi-atlas segmentation. The main method is described in the Yushkevich et al. 2011 Neuroimage paper (http://tinyurl.com/cffrp3p). * execution requires: Advanced Normalization Tools, FSL

Abbreviations: ASHS

Synonyms: Automatic Segmentation of Hippocampal Subfields, HippocampalSubfieldSegmentation

Resource Type: data processing software, segmentation software, image analysis software, software resource, software application

Defining Citation: PMID:19405131, PMID:20600984

Keywords: hippocampus, mri, t1-weighted image, t2-weighted image, ca1, ca2, ca3, statistical modeling, magnetic resonance

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This resource

is listed by	NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to	ANTS - Advanced Normalization ToolS
is related to	FSL
has parent organization	Harvard Medical School; Massachusetts; USA

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