URL: https://phenogen.org
Proper Citation: PhenoGen Informatics (RRID:SCR_001613)
Description: Website for analyzing microarray data. Software toolbox for storing, analyzing and integrating microarray data and related genotype and phenotype data. The site is particularly suited for combining QTL and microarray data to search for candidate genes contributing to complex traits. In addition, the site allows, if desired by the investigators, sharing of the data. Investigators can conduct in-silico microarray experiments using their own and/or shared data. There are five major sections of the site: Genome/Transcriptome Data Browser, Microarray Analysis Tools, Gene List Analysis Tools, QTL Tools, and Downloads. The genome/transcriptome data browser combines a genome browser with all the microarray, RNA-Seq, and Genomic Sequencing data. This provides an effective platform to view all of this data side by side. Source code is available on GitHub.
Abbreviations: PhenoGen
Synonyms: PhenoGen Informatics - The site for quantitative genetics of the transcriptome.
Resource Type: source code, service resource, data or information resource, storage service resource, data access protocol, production service resource, data repository, data set, data analysis service, application programming interface, analysis service resource, software resource
Defining Citation: PMID:17760997
Keywords: genome, transcription, microarray, gene, quantitative trait loci, analysis, complex trait, genotype, phenotype, high-throughput, rna-seq, snp, genomic marker, region, data sharing, normalize, statistics, gene list, pathway, expression value, expression, correlation, exon, annotation, promoter, homolog, brain, heart, liver, adipose, candidate gene, genetics, transcriptome, eqtl, genome browser, inbred panel
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