URL: http://www.spiralgenetics.com/products/
Proper Citation: Anchored Assembly (RRID:SCR_001188)
Description: Analysis pipeline that accurately detects and maps variations that are often missed by standard analysis algorithms. It uses direct de novo read overlap assembly to accurately detect and characterize SNPs (single nucleotide polymorphisms), indels, and SVs (structural variations). The pipeline uses existing Illumina HiSeq data and does not require additional library preparation. The algorithm is optimized for projects with at least 20x coverage per chromosome set (i.e. 40x for diploid).
Abbreviations: Anchored Assembly
Resource Type: commercial organization, software resource
Keywords: variation, structural variation, single nucleotide polymorphism
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