URL: https://cab.spbu.ru/software/spades/
Proper Citation: SPAdes (RRID:SCR_000131)
Description: Software package for assembling single cell genomes and mini metagenomes. Uses short read sets as input. Used for genomes of uncultivatable bacteria that vastly exceeds what may be obtained via traditional metagenomics studies. Works with Illumina or IonTorrent reads and can provide hybrid assemblies using PacBio, Oxford Nanopore and Sanger reads. Intended for small genomes like bacterial or fungal., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Abbreviations: SPAdes
Synonyms: SPAdes Genome Assembler
Resource Type: software resource, software toolkit
Defining Citation: PMID:24093227, PMID:22506599, DOI:10.1089/cmb.2012.0021
Keywords: assembler, single, cell, small, genome, short, read, data
Funding: Government of the Russian Federation ; NCRR P41 RR024851
Availability: THIS RESOURCE IS NO LONGER IN SERVICE
Resource Name: SPAdes
Resource ID: SCR_000131
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Saint Petersburg Academic University; Saint Petersburg; Russia |
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
