DAVID (tool)

RRID:SCR_001881

Bioinformatics resource system including web server and web service for functional annotation and enrichment analyses of gene lists. Consists of comprehensive knowledgebase and set of functional analysis tools. Includes gene centered database integrating heterogeneous gene annotation resources to facilitate high throughput gene functional analysis.

RefSeq (tool)

RRID:SCR_003496

Collection of curated, non-redundant genomic DNA, transcript RNA, and protein sequences produced by NCBI. Provides a reference for genome annotation, gene identification and characterization, mutation and polymorphism analysis, expression studies, and comparative analyses. Accessed through the Nucleotide and Protein databases.

Promega (tool)

RRID:SCR_006724

An Antibody supplier

Millipore (tool)

RRID:SCR_008983

An Antibody supplier

edgeR (tool)

RRID:SCR_012802

Bioconductor software package for Empirical analysis of Digital Gene Expression data in R. Used for differential expression analysis of RNA-seq and digital gene expression data with biological replication.

BD Biosciences (tool)

RRID:SCR_013311

An Antibody supplier

HISAT2 (tool)

RRID:SCR_015530

Graph-based alignment of next generation sequencing reads to a population of genomes.

StringTie (tool)

RRID:SCR_016323

Software application for assembling of RNA-Seq alignments into potential transcripts. It enables improved reconstruction of a transcriptome from RNA-seq reads. This transcript assembling and quantification program is implemented in C++ .

test (tool)

RRID:SCR_018743

test

Streptavidin-Allophycocyanin (antibody)

RRID:AB_10050396

This unknown targets Streptavidin-Allophycocyanin

T-bet Monoclonal Antibody (eBio4B10 (4B10)), PE, eBioscience (antibody)

RRID:AB_925762

This monoclonal targets T-bet

CD73 Monoclonal Antibody (eBioTY/11.8 (TY/11.8)), PE, eBioscience (antibody)

RRID:AB_763516

This monoclonal targets CD73

Brilliant Violet 421(TM) anti-mouse CD69 (antibody)

RRID:AB_2686969

This monoclonal targets CD69

CD44 (antibody)

RRID:AB_10895375

This monoclonal targets CD44

PE/Cyanine7 anti-mouse CD8a (antibody)

RRID:AB_312760

This monoclonal targets CD8a

CD5 Monoclonal Antibody (53-7.3), PerCP-Cyanine5.5, eBioscience (antibody)

RRID:AB_914332

This monoclonal targets CD5

CD4 (antibody)

RRID:AB_2737870

This monoclonal targets CD4

PE Anti-Mouse CD3e (145-2C11) Antibody (antibody)

RRID:AB_2621730

This monoclonal targets CD3e

Cytofix Fixation Buffer 100mL (antibody)

RRID:AB_2869005

This unknown targets

AffiniPure Goat Anti-Armenian Hamster IgG (H+L) (min X Bov,Hu,Ms,Rb,Rat Sr Prot) (antibody)

RRID:AB_2338972

This unknown targets Armenian Hamster IgG (H+L)

Purified NA/LE Hamster Anti-Mouse CD3e Clone 145-2C11 (antibody)

RRID:AB_394590

This monoclonal targets CD3e

α Tubulin antibody (A-6) (antibody)

RRID:AB_2832217

This monoclonal targets α Tubulin

Anti-β-Actin Antibody (C4) (antibody)

RRID:AB_626632

This monoclonal targets β-Actin

Phospho-p38 MAPK (Thr180/Tyr182) Antibody (antibody)

RRID:AB_331641

This polyclonal targets p38 MAPK, phospho (Thr180 / Tyr182)

Anti-p38 MAPK Antibody, Unconjugated (antibody)

RRID:AB_330713

This polyclonal targets p38 MAPK

Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (D13.14.4E) XP® Rabbit mAb (antibody)

RRID:AB_2315112

This monoclonal targets Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204)

p44/42 MAPK (Erk1/2) Antibody (antibody)

RRID:AB_330744

This polyclonal targets p44/42 MAPK (Erk1/2)

Phospho-SAPK/JNK (Thr183/Tyr185) Antibody (antibody)

RRID:AB_331659

This polyclonal targets Phospho-SAPK/JNK (Thr183/Tyr185)

SAPK/JNK Antibody (antibody)

RRID:AB_2250373

This polyclonal targets SAPK/JNK

Anti-Zap-70, phospho (Tyr319) / Syk, phospho (Tyr352) Antibody, Unconjugated (antibody)

RRID:AB_331600

This unknown targets Zap-70, phospho (Tyr319) / Syk, phospho (Tyr352)

Zap-70 (99F2) Rabbit mAb (antibody)

RRID:AB_2273231

This recombinant monoclonal targets Zap-70

Phospho-PLCgamma1 (Tyr783) Antibody (antibody)

RRID:AB_330855

This polyclonal targets Phospho-PLCgamma1 (Tyr783)

PLCgamma1 (D9H10) XP Rabbit mAb (antibody)

RRID:AB_10691383

This monoclonal targets PLCgamma1 (D9H10) XP Rabbit mAb

PE Donkey anti-rabbit IgG (min. x-reactivity) (antibody)

RRID:AB_2563484

This unknown targets Rabbit IgG

PE anti-DYKDDDDK Tag (antibody)

RRID:AB_2563147

This monoclonal targets DYKDDDDK

FOXP3 Monoclonal Antibody (FJK-16s), APC, eBioscience (antibody)

RRID:AB_469456

This monoclonal targets FOXP3

Nur77 Monoclonal Antibody (12.14), PE, eBioscience (antibody)

RRID:AB_1257209

This monoclonal targets Nur77

CD279 (PD-1) Monoclonal Antibody (RMP1-30), FITC, eBioscience (antibody)

RRID:AB_465466

This monoclonal targets CD279 (PD-1)

TCR H-Y (male antigen) Monoclonal Antibody (T3.70), FITC, eBioscience (antibody)

RRID:AB_465452

This monoclonal targets TCR H-Y (male antigen)

Ly-6G/Ly-6C Monoclonal Antibody (RB6-8C5), APC, eBioscience (antibody)

RRID:AB_469475

This monoclonal targets Ly-6G/Ly-6C

TER-119 Monoclonal Antibody (TER-119), APC, eBioscience (antibody)

RRID:AB_469472

This monoclonal targets TER-119

APC anti-mouse NK-1.1 (antibody)

RRID:AB_313396

This monoclonal targets NK-1.1

TCR gamma/delta Monoclonal Antibody (eBioGL3 (GL-3, GL3)), APC, eBioscience (antibody)

RRID:AB_842757

This monoclonal targets TCR gamma/delta

PE anti-mouse TCR Vbeta13 (antibody)

RRID:AB_10639945

This monoclonal targets TCR Vbeta13

PE anti-mouse TCR Vbeta12 (antibody)

RRID:AB_10639729

This monoclonal targets TCR Vbeta12

PE anti-mouse TCR Vbeta11 (antibody)

RRID:AB_1227781

This monoclonal targets TCR Vbeta11

PE anti-mouse TCR Vbeta9 (antibody)

RRID:AB_10641563

This monoclonal targets TCR Vbeta9

Armenian Hamster Anti-TCR V beta 8.3 Monoclonal Antibody, Phycoerythrin Conjugated, Clone 1B3.3 (antibody)

RRID:AB_394980

This monoclonal targets TCR V beta 8.3

PE anti-mouse TCR Vbeta8.1, 8.2 (antibody)

RRID:AB_1134109

This monoclonal targets TCR Vbeta8.1 8.2

PE anti-mouse TCR Vbeta7 (antibody)

RRID:AB_893628

This monoclonal targets TCR Vbeta7

PE anti-mouse TCR Vbeta6 (antibody)

RRID:AB_10643583

This monoclonal targets TCR Vbeta6

Mouse Anti-TCR V beta 5.1, 5.2 Monoclonal Antibody, FITC Conjugated, Clone MR9-4 (antibody)

RRID:AB_394697

This monoclonal targets TCR Vβ5.1, 5.2

PE anti-mouse TCR Vbeta2 (antibody)

RRID:AB_1227784

This monoclonal targets TCR Vbeta2

FITC Anti-Mouse TCR beta (H57-597) (antibody)

RRID:AB_2621723

This monoclonal targets TCR beta

CXCR5 (antibody)

RRID:AB_394301

This monoclonal targets CXCR5

FITC anti-mouse CD90.2 (Thy1.2) (antibody)

RRID:AB_10642686

This monoclonal targets CD90.2

CD90.1 (Thy-1.1) Monoclonal Antibody (HIS51), PerCP-Cyanine5.5, eBioscience (antibody)

RRID:AB_2573662

This monoclonal targets CD90.1 (Thy-1.1)

Rat Anti-Mouse CD62L Antibody, PE-Cy???7 Conjugated (antibody)

RRID:AB_1645257

This unknown targets CD62L (L-Selectin)

violetFluor 450 Anti-Mouse CD25 (PC61.5) (antibody)

RRID:AB_2621943

This monoclonal targets CD25

Pacific Blue(TM) anti-mouse CD24 (antibody)

RRID:AB_572010

This monoclonal targets CD24

CD19 (antibody)

RRID:AB_10893995

This monoclonal targets CD19

APC anti-mouse CD11c (antibody)

RRID:AB_313778

This monoclonal targets CD11c

APC anti-mouse/human CD11b (antibody)

RRID:AB_312794

This monoclonal targets CD11b

PE/Cyanine7 anti-mouse CD73 (antibody)

RRID:AB_2716102

This monoclonal targets CD73

APC anti-mouse CD69 (antibody)

RRID:AB_492844

This monoclonal targets CD69

Rat Anti-CD44 Monoclonal Antibody, FITC Conjugated, Clone IM7 (antibody)

RRID:AB_2076224

This monoclonal targets CD44

Alexa Fluor(R) 488 anti-mouse CD8a (antibody)

RRID:AB_389304

This monoclonal targets CD8a

APC anti-mouse CD5 (antibody)

RRID:AB_2563928

This monoclonal targets CD5

Brilliant Violet 785(TM) anti-mouse CD4 (antibody)

RRID:AB_2563053

This monoclonal targets CD4

APC/Cyanine7 anti-mouse CD3epsilon (antibody)

RRID:AB_1877171

This monoclonal targets CD3epsilon

GraphPad Prism (software resource)

RRID:SCR_002798

Statistical analysis software that combines scientific graphing, comprehensive curve fitting (nonlinear regression), understandable statistics, and data organization. Designed for biological research applications in pharmacology, physiology, and other biological fields for data analysis, hypothesis testing, and modeling.

ImageJ (software resource)

RRID:SCR_003070

Open source Java based image processing software program designed for scientific multidimensional images. ImageJ has been transformed to ImageJ2 application to improve data engine to be sufficient to analyze modern datasets.

FlowJo (software resource)

RRID:SCR_008520

Software for single-cell flow cytometry analysis. Its functions include management, display, manipulation, analysis and publication of the data stream produced by flow and mass cytometers.

pCL-Eco (plasmid)

RRID:Addgene_12371

MIGR1 (plasmid)

RRID:Addgene_27490

T-bet Monoclonal Antibody (eBio4B10 (4B10)), PE, eBioscience (antibody)

RRID:AB_925762

This monoclonal targets T-bet

Plat-E (cell line)

RRID:CVCL_B488

Cell line Plat-E is a Transformed cell line with a species of origin Homo sapiens (Human)

B6.Cg-Foxp3^tm2Tch/J (organism)

RRID:IMSR_JAX:006772

Mus musculus with name B6.Cg-Foxp3^tm2Tch/J from IMSR.

B6.Cg-Tg(TcraTcrb)425Cbn/J (organism)

RRID:IMSR_JAX:004194

Mus musculus with name B6.Cg-Tg(TcraTcrb)425Cbn/J from IMSR.

Tg(TcraH-Y/TcrbH-Y)71Vbo (organism)

RRID:MGI:3588781

Allele Detail: Transgenic This is a legacy resource.

B6(SJL)-Cic^{tm1c(KOMP)Wtsi}/HzoJ (organism)

RRID:IMSR_JAX:030555

Mus musculus with name B6(SJL)-Cic^{tm1c(KOMP)Wtsi}/HzoJ from IMSR.

B6NTac.Cg-Tg(Lck-cre)1Cwi/Mmnc (organism)

RRID:MMRRC_037396-UNC

Mus musculus with name B6NTac.Cg-Tg(Lck-cre)1Cwi/Mmnc from MMRRC.

B6.Cg-Tg(Cd4-cre)1Cwi/BfluJ (organism)

RRID:IMSR_JAX:022071

Mus musculus with name B6.Cg-Tg(Cd4-cre)1Cwi/BfluJ from IMSR.

B6.Cg-Commd10^{Tg(Vav1-icre)A2Kio}/J (organism)

RRID:IMSR_JAX:008610

Mus musculus with name B6.Cg-Commd10^{Tg(Vav1-icre)A2Kio}/J from IMSR.

C57BL/6J (organism)

RRID:IMSR_JAX:000664

Mus musculus with name C57BL/6J from IMSR.