URL: http://bioweb.ensam.inra.fr/spodobase/
Proper Citation: SpodoBase (RRID:SCR_005117)
Description: An integrated database for the genomics of the Lepidoptera Spodoptera frugiperda. It provides access to expressed sequence tags (EST) from Spodoptera frugiperda. ESTs from five independent cDNA libraries, prepared from three different S. frugiperda tissues (hemocytes, midgut and fat body) and from the Sf9 cell line, are deposited in the database. These tissues were chosen because of their importance in biological processes such as immune response, development and plant/insect interaction. So far, the SPODOBASE contains 29,325 ESTs, which are cleaned and clustered into non-redundant sets (2294 clusters and 6103 singletons). The SPODOBASE is constructed in such a way that other ESTs from S. frugiperda or other species may be added. User can retrieve information using text searches, pre-formatted queries, query assistant or blast searches. Annotation is provided against NCBI, UNIPROT or Bombyx mori ESTs databases, and with GO-Slim vocabulary.
Synonyms: SpodoBase
Resource Type: data or information resource, database
Keywords: est, expressed sequence tag, lepidoptera, spodoptera frugiperda, spodoptera frugiperda est, spodoptera frugiperda expressed sequence tags
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