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Proper Citation: Smart-seq2 Single Nucleus Multi Sample Pipeline (RRID:SCR_021312)
Description: Software pipeline for single-nucleus RNAseq data generated by Smart-seq2 assays.Used to simultaneously process multiple libraries of single nuclei Smart-seq2 and Smart-seq4 data. For each library (nucleus), the pipeline trims paired FASTQ files, aligns trimmed reads to the genome, counts intronic and exonic reads, and calculates quality control metrics. Counts and metrics for all libraries are combined into merged Loom formatted count matrix.
Synonyms: Multi-snSS2, Smart-seq2 Single Nucleus Multi-Sample Pipeline
Resource Type: data processing software, software application, software resource, software toolkit
Keywords: snRNAseq data, Smart-seq2 assays, single nucleus, multi sample, WARP repository
Availability: Free, Freely available
Resource Name: Smart-seq2 Single Nucleus Multi Sample Pipeline
Resource ID: SCR_021312
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
