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UniProt Archive (UniParc) is part of UniProt project. It is a non-redundant archive of protein sequences extracted from public databases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, PIR-PSD, EMBL, EMBL WGS, Ensembl, IPI, PDB, PIR-PSD, RefSeq, FlyBase, WormBase, H-Invitational Database, TROME database, European Patent Office proteins, United States Patent and Trademark Office proteins (USPTO) and Japan Patent Office proteins. UniParc contains only protein sequences. All other information about the protein must be retrieved from the source databases using the database cross-references. Each unique sequence is stored only once with a stable identifier. The format of the identifier is UPI followed by ten hexadecimal numbers, e.g. UPI000000000A. UniParc proteins are linked to their source databases by database cross-references. Each cross-reference links one protein in UniParc to an accession number in a source database. The database cross-reference is active as long as the sequence identified by the source accession number remains unchanged. When the sequence is modified or removed in the source database, the cross-reference from UniParc becomes inactive. Active cross-reference can be used to directly access the source databases but inactive cross-references can only be used to access sequences archives, such as the Sequence Version Archive. UniParc is available for text- and sequence-based searches. Sequences, which are no longer part of any source database, are excluded from sequence-based searches, but they are available for text-based SRS searches. Performing a similarity search against UniParc is equivalent to performing the same search against all databases cross-referenced in UniParc, as UniParc contains all proteins from its source databases. Sequence similarity searches can be done using FASTA, BLAST or Mpsrch.

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• SciCrunch
• 16 years ago - by Anonymous

Portal providing access to all JGI genomic databases and analytical tools, sequencing projects and their status, search for and download assemblies and annotations of sequenced genomes, and interactively explore those genomes and compare them with other sequenced microbes, fungi, plants or metagenomes using specialized systems tailored to each particular class of organisms. The Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility with massive-scale DNA sequencing and analysis capabilities dedicated to advancing genomics for bioenergy and environmental applications. Beyond generating tens of trillions of DNA bases annually, the Institute develops and maintains data management systems and specialized analytical capabilities to manage and interpret complex genomic data sets, and to enable an expanding community of users around the world to analyze these data in different contexts over the web.

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• SciCrunch
• 16 years ago - by Anonymous

National and international arabidopsis germplasm resource.Stores over million genotypes in physical stocks servicing worldwide Arabidopsis community in more than 50 countries. Stocks are provided under identical cost recovery conditions to academic and commercial researchers. Non-transgenic stocks are sent gratis to K-17 institutions and in special cases. Provides seed and information resources to International Arabidopsis Genome Programme and research community. Maintains accessions of Arabidopsis thaliana (and small number of other related species), including Characterized lines, Mapping populations, and Insertion lines. You may browse or search catalog.

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• SciCrunch
• 16 years ago - by Anonymous

Non-profit biomedical research organization developing predictors of disease and accelerating health research through creation of open systems, incentives, and standards. Formed to coordinate and link academic and commercial biomedical researchers through Commons that represents new paradigm for genomics intellectual property, researcher cooperation, and contributor evolved resources.

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• SciCrunch
• 16 years ago - by Anonymous

Atlas of developing human brain for studying transcriptional mechanisms involved in human brain development. One of the BrainSpan datasets, Exon microarray summarized to genes, is presented. It is a downloadable archive of files containing normalized RNA-Seq expression values for analysis.RNA-Seq exons datasets

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• SciCrunch
• 16 years ago - by Anonymous

Institute for the study of theoretical biology with a focus on evolutionary developmental biology and cultural complexity.

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• SciCrunch
• 16 years ago - by Anonymous

Parkinson''s UK is a Parkinson''s research and support charity in the United Kingdom. In April 2010, the Parkinson''s Disease Society changed its name to become Parkinson''s UK. Its aims are to improve the quality of life for people affected by Parkinson''s and find a cure for the condition. Parkinson''s UK is the largest charity funder of research into Parkinson''s in the UK, it funds research aimed at finding better treatments and improving the understanding of Parkinson''s and its causes. It raises money through donations, legacies, community fundraising, events and corporate partnerships. The charity offers support and information to people affected by Parkinson''s, their families and carers through a network of 350 local groups across England, Wales, Scotland and Northern Ireland. (Wikipedia)

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• SciCrunch
• 16 years ago - by Anonymous

Collaborative project to bring together biochemical pathway databases and research communities focused on plant metabolism. Used to build broad network of plant metabolic pathway databases. Central feature of PMN is PlantCyc, comprehensive plant biochemical pathway database, containing curated information from literature and computational analyses about genes, enzymes, compounds, reactions, and pathways involved in primary and secondary metabolism.

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• SciCrunch
• 16 years ago - by Anonymous

An integrated software library for vector classification, regression and distribution estimation. It supports multi-class classification. LIBSVM provides a simple interface where users can easily link it with their own programs. Main features of LIBSVM include: * Different Support Vector Machine (SVM) formulations * Efficient multi-class classification * Cross validation for model selection * Probability estimates * Various kernels (including precomputed kernel matrix) * Weighted SVM for unbalanced data * Both C++ and Java sources * GUI demonstrating SVM classification and regression * Python, R, MATLAB, Perl, Ruby, Weka, Common LISP, CLISP, Haskell, OCaml, LabVIEW, and PHP interfaces. C# .NET code and CUDA extension is available. * It''s also included in some data mining environments: RapidMiner, PCP, and LIONsolver. * Automatic model selection which can generate contour of cross valiation accuracy.

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• SciCrunch
• 13 years ago - by Anonymous

Comprehensive hierarchical controlled vocabulary for human disease representation.Open source ontology for integration of biomedical data associated with human disease. Disease Ontology database represents comprehensive knowledge base of inherited, developmental and acquired human diseases.

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• SciCrunch
• 17 years ago - by Anonymous

Ontology that defines hierarchical display of different rat strains as derived from parental strains. Ontology Browser allows to retrieve all genes, QTLs, strains and homologs annotated to particular term. Covers all types of biological pathways including altered and disease pathways, and to capture relationships between them within hierarchical structure. Five nodes of ontology include classic metabolic, regulatory, signaling, drug and disease pathways. Ontology allows for standardized annotation of rat. Serves as vehicle to connect between genes and ontology reports, between reports and interactive pathway diagrams, between pathways that directly connect to one another within diagram or between pathways that in some fashion are globally related in pathway suites and suite networks.

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• SciCrunch
• 13 years ago - by Anonymous

Portal provides list of software resources. LONI is leader in development of advanced computational algorithms and software for comprehensive and quantitative mapping of brain structure and function. Aims to encourage communication between users and LONI software engineers in order to improve effectiveness.

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• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2025. Database which provides a comprehensive set of functional annotation tools for investigators to understand biological meaning behind large list of genes. For any given gene list, DAVID tools are able to perform a variety of actions such as identifying enriched biological themes (particularly GO terms), discovering enriched functional-related gene groups, clustering redundant annotation terms, and visualizing genes on BioCarta and KEGG pathway maps.

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• SciCrunch
• 15 years ago - by Anonymous

Contract Research Org. specializing in custom protein analysis. Services Provided include SDS PAGE analysis, Western Blotting, Mass Spectrometry, protein staining ( silver,coomassie) for academia, federal institutions and industry.

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• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2025. eGOn is a web-based tool for interpreting and statistical analysis of genomic data or other interesting gene sets using Gene Ontology. eGOn is a graphical, interactive data mining tool. It associates user input reporter lists with GO terms and visualizes such GO terms as a hierarchical tree. Users can manipulate the tree output by various means. Significantly important GO terms resulted from a statistical test can be reported. All related information is exportable. Key features: - User friendly web-based interface and free of charge for academic users - Database storage of reporter lists - Manage submitted reporter lists in folders and sharing opportunities of reporter lists. - Enable filtering on GO evidence codes - Regularly updates of GO and gene annotation data - Fully expandable trees for browsing the GO hierarchy - Direct link to the NTNU Annotation Database for gene annotation information - Possible to add user defined GO annotations - Several statistic testes for analyses within and between reporter lists, indicating GO terms with relatively enriched gene numbers and suggesting biological areas that warrant further study. Result report views with statistical significant GO terms. - Results can be exported in txt, xls or XML format Sponsors: eGOn is developed by the Norwegian Microarray Consortium (NMC) and Department of Cancer Research and Molecular Medicine at Norwegian University of Science and Technology (NTNU).

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• SciCrunch
• 17 years ago - by Anonymous

Provides informationa about Genome of California Purple Sea Urchin, one species (Strongylocentrotus purpuratus) of which has been sequenced and annotated by Sea Urchin Genome Sequencing Consortium led by HGSC. Reports sequence and analysis of genome of sea urchin Strongylocentrotus purpuratus, a model for developmental and systems biology.

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• SciCrunch
• 17 years ago - by Anonymous

Spinal Research committed to funding international research into cure for spinal cord paralysis. Charity that funds medical research for treating and curing spinal cord paralysis. Supports basic science, clinical research and funds PhD students. ISRT also hosts Annual Network Meetings.

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• SciCrunch
• 17 years ago - by Anonymous

Software package for using multi locus genotype data to investigate population structure. Used for inferring presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed. Can be applied to most of commonly used genetic markers, including SNPS, microsatellites, RFLPs and Amplified Fragment Length Polymorphisms.

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• SciCrunch
• 13 years ago - by Anonymous

Integrated software system for storing, managing, analyzing, and querying biological pathways at different levels of genetic, molecular, biochemical and organismal detail. At the computational level, PathCase allows users to visualize pathways in multiple abstraction levels, and to pose predetermined as well as ad hoc queries using a graphical user interface.

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• SciCrunch
• 17 years ago - by Anonymous

Image processing and analysis software.

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• SciCrunch
• 12 years ago - by Anonymous