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A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just ''heart'' really means ''heart (CS 9-20)''. Timing details will be added to the abstract version of the ontology in a future release.

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• SciCrunch
• 13 years ago - by Anonymous

A structured controlled vocabulary for the anatomy of fungi.

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• SciCrunch
• 13 years ago - by Anonymous

Ontology generated from the Flora Malesiana, Flora Gabon, Flora of Central Africa, and a collection of Kew''s African Floras. Every class in the ontology has at least one taxon annotation. This is the pre-classified version of the ontology; the original OWL file is at http://jagannath.pdn.cam.ac.uk/plant/flopo-unclassified.owl

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• SciCrunch
• 13 years ago - by Anonymous

Ontology to represent the set of concepts about the fire occurring in natural vegetation, its characteristics, causes and effects, with focus on Cerrado vegetation domain. The fire plays a determinant role on the structure and composition of Cerrado physiognomies.

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• SciCrunch
• 13 years ago - by Anonymous

An application ontology devoted to the standardized recording of data related to Fanconi Anemia (FA). This ontology was created using an OWL file provided by Dr. Ada Hamish (and Francois Schiettecatte) at the Centers for Mendelian Genetics, with their permission. Their original ontology can be found at: http://phenodb.net/help/features. Modifications were made using HPO, OMIM, NCI, and SNOMED. Novel classes pertaining to FA were added and defined as appropriate.

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• SciCrunch
• 13 years ago - by Anonymous

An ontology for Loggerhead sea turtle (Caretta caretta) nesting behavior, based on the published ethogram of Hailman and Elowson. A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms.

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• SciCrunch
• 13 years ago - by Anonymous

Ontology about the epilepsy domain and epileptic seizures. Based on the diagnosis proposed by the International League Against Epilepsy (ILAE).

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• SciCrunch
• 13 years ago - by Anonymous

An enzyme ontology that deals with partial reactions (transformations)

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• SciCrunch
• 13 years ago - by Anonymous

Ontology to describe the active components of the enzyme''s reactions (cofactors, amino acid residues and cognate ligands) and their roles in the reaction. EMO builds upon this by formalizing key concepts, and the relationships between them, necessary to define enzymes and their functions. This describes not only the general features of an enzyme, including the EC number (catalytic activity), 3D structure and cellular locations, but also allows for the detailed annotation of the mechanism. This mechanistic detail can be either at a gross level (overall reaction only), or the more detailed granularity of the steps and components required to effect the overall chemical transformation.

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• SciCrunch
• 13 years ago - by Anonymous

A set of 1,437 eligibility features that were organized into a feature hierarchy using 80 breast cancer trials.

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• SciCrunch
• 13 years ago - by Anonymous

Ontology for describing electrocardiograms, their capture method(s) and their waveforms.

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• SciCrunch
• 13 years ago - by Anonymous

Ontology terms useful for machine learning experiments. The terminology appearing in JMLA has been enriched with terms from MeSH and Emtree, the controlled vocabularies for MEDLINE and Embase, respectively. Synonyms include American and British variants and some inverted terms.

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• SciCrunch
• 13 years ago - by Anonymous

A structured controlled vocabulary of the anatomy of Drosophila melanogaster.

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• SciCrunch
• 13 years ago - by Anonymous

A structured controlled vocabulary of the development of Drosophila melanogaster.

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• SciCrunch
• 13 years ago - by Anonymous

Ontology that is a schema for information brokering and knowledge management in the complex field of rare diseases. On the one hand, the Dispedia schema uses semantic technologies to describe patients affected by rare diseases, and on the other hand, to record expertise concerning these particular diseases in machine-processable form. In addition to the differentiated attribution of facts to the individual need for information, Dispedia enables information brokering which adjusts to the type of recipient, its character as well as its personal attitude. The schema was initially geared to an exemplified disease, Amyotrophe Lateralsclerose (ALS).

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• SciCrunch
• 13 years ago - by Anonymous

A core ontology consistent with a metamodel (disorders and groups of disorders, genes, clinical signs and their relations) and an instantiation of this metamodel with Orphanet Data (available on http://orphadata.org). br> Research experiments demonstrated (i) efficient classifications generation based on SPARQL Construct, (ii) perspectives in semantic audit of a knowledge base, (iii) semantic comparison with OMIM (www.omim.org) using proximity measurements and (iv) opened perspectives in knowledge sharing (LORD, http://lord.bndmr.fr). Current production services of Orphanet developed ORDO, released in 2014, an ontology synchronized with their production database.

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• SciCrunch
• 13 years ago - by Anonymous

A computational diagnostic ontology containing 91 elements, including classes and sub-classes, which are required to conduct SR-MA (Systematic Review - Meta Analysis) for diagnostic studies, that will assist in standardized reporting of diagnostic articles. They also report high percentage of agreement among five observers as a result of the inter-observer agreement that they conducted among them to tag 13 articles using the diagnostic ontology. Moreover, they extend their existing repository CERR-N (Center of Excellence in Research Reporting in Neurosurgery) to include diagnostic studies.

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• SciCrunch
• 13 years ago - by Anonymous

Diagnosis ontology of clinical care classification.

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• SciCrunch
• 13 years ago - by Anonymous

A standardized terminology of dermatologic diagnoses, therapies, procedures, and laboratory tests.

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• SciCrunch
• 13 years ago - by Anonymous

An ontology for dengue fever.

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• SciCrunch
• 13 years ago - by Anonymous