Curator Dashboard

Software for genomic expression data mining using a statistical technique for finding significant genes in a set of microarray experiments.

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• SciCrunch
• 13 years ago - by Anonymous

A collection of web tools designed to assist with the analysis of DNA microarray data and results. RACE performs probe level data preprocessing, quality checks, normalization, and visualization for Affymetrix GeneChips. In addition, it performs clustering and differential analysis of normalized expression levels or ratios for arbitrary platforms, and estimates the false discovery rates in lists of potentially regulated genes. A Gene Ontology (GO)-term analysis assists in the biological interpretation of gene lists. The user can customize each analysis request; upon submission the analysis is executed in a fully automated way., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

Data analysis server / software designed to test statistical significance of gene microarray data, visualize the results, and provide links to clone information and gene index. Several public datasets are also available.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 22, 2021.A computational tool that allows the user to search, visualise and store different data associated with gene expression.

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• SciCrunch
• 13 years ago - by Anonymous

Integrates many useful tools to simplify ChIP-chip analysis for biologists., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

Software providing a workbench for visualization, analysis and storage of microarray data. It features a graphical user interface and supports the development and integration of existing and new analysis methods. Besides the infrastructural core functionality, Mayday offers a variety of plug-ins, such as various interactive viewers, a connection to the R statistical environment, a connection to SQL-based databases, and different clustering methods, including phylogenetic methods. In addition, so-called meta information objects are provided for annotation of the microarray data allowing integration of data from different sources. This meta information can be used to enhance visualizations, such as in the enhanced heatmap visualization. Written in the Java programming language, Mayday is extremely portable and runs on all platforms supporting the Java runtime environment 1.6.

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• SciCrunch
• 13 years ago - by Anonymous

A microarray data warehouse integrated with a software platform for microarray data analysis. It can be used as a LIMS for DNA chip experiments, also. Unlike other microarray data repositories, it entirely dispenses with free-text format, instead holding all the information in a format ready for statistical analysis.

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• SciCrunch
• 13 years ago - by Anonymous

Software package for the analysis of gene expression microarray data, especially the use of linear models for analyzing designed experiments and the assessment of differential expression.

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• SciCrunch
• 13 years ago - by Anonymous

A microarray-experiment oriented warehouse for collections of expression data, integrated with gene annotation profiling and used to support genomic data mining processes. It provides means to access and extract valuable information from a Laboratory Information Management System (LIMS) and makes use of several plug-ins to process and analyze the data. The system consists of two parts: MIAME compliant data storage is handled by the LIMS while data analysis is performed in the DWH. The core of the system is BASE. Accessing LIMS and DWH is accomplished through secure connections.

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• SciCrunch
• 13 years ago - by Anonymous

A drawing software application designed for drawing and analyzing chemical structures and reactions.

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• SciCrunch
• 12 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented May 17, 2017. A MAGE-compliant software platform for the collaborative analysis and integration of microarray data.

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• SciCrunch
• 13 years ago - by Anonymous

A user-friendly analysis software for high-throughput data.

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• SciCrunch
• 13 years ago - by Anonymous

An integrated software package for the visualization and statistical analysis of DNA microarray gene expression data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

A comprehensive management application for information, data, and analysis of microarray experiments, available as free open source software.

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• SciCrunch
• 13 years ago - by Anonymous

A set of web-based applications for the analysis of genomic and proteomic data. Asterias combines Python with R and C/C++, using MPI for parallelization, and aspires to become a standard for high-performance, distributed, web-based bioinformatics and biostatistics applications.

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• SciCrunch
• 13 years ago - by Anonymous

A web-accessible program for the analysis of DNA microarray data. ArrayQuest is designed to apply any type of DNA microarray analysis program executable on a Linux system (i.e., Bioconductor statistical and graphical methods written in R as well as BioPerl and C++ based scripts) to DNA microarray data stored in the MUSC DNA Microarray Database, the Gene Expression Omnibus (GEO) or in a password protected private database uploaded to the center point server. ArrayQuest analyses are performed on a computer cluster.

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• SciCrunch
• 13 years ago - by Anonymous

A flexible tool for visualizing and analyzing your two-colour microarray slides.

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• SciCrunch
• 13 years ago - by Anonymous

Software providing a collection of utilities for quality control and processing of two-colour cDNA microarray data

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• SciCrunch
• 13 years ago - by Anonymous

Tools for microarray quality control and pre-processing.

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• SciCrunch
• 13 years ago - by Anonymous

A spotted microarray data pre-processing platform featuring analysis functionalities for CGH and expression data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous