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Neuroglancer
WebGL-based viewer for volumetric data. It is capable of displaying arbitrary (non axis-aligned) cross-sectional views of volumetric data, as well as 3-D meshes and line-segment based models (skeletons).
- Resource
- RRID-Legacy
- 10 years ago - submitted by Anita Bandrowski
CUDAICA
Software that implements Infomax ICA, which is an algorithm to perform Independent Component Analysis, in CUDA (a parallel computing platform and programming model).
- Resource
- RRID-Legacy
- 10 years ago - submitted by Federico Raimondo
BoxPlotR
Web tool written in R for generation of box plots with R packages shiny, beanplot4, vioplot, beeswarm and RColorBrewer, and hosted on shiny server to allow for interactive data analysis. Data are held temporarily and discarded as soon as session terminates.Represents both summary statistics and distribution of primary data. Enables visualization of minimum, lower quartile, median, upper quartile and maximum of any data set.Data matrix can be uploaded as file or pasted into application. May be downloaded to run locally or as virtual machine for VMware and VirtualBox.
- Resource
- RRID-Legacy
- 10 years ago - submitted by Elcin Unal
Cerebrovascular Disease Knowledge Portal
Portal enables browsing, searching, and analysis of human genetic information linked to cerebrovascular disease and related traits, while protecting the integrity and confidentiality of the underlying data.
- Resource
- SciCrunch
- 10 years ago - submitted by Ko-Wei Lin
STATISTICA_dup
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1,2023. Analytics platform with various sub platforms, each with specific performance capabilities for tasks such as data analysis, data management, data visualization, and data mining procedures.
- Resource
- RRID-Legacy
- 10 years ago - by Anonymous
ChAS (Chromosome Analysis Suite)
Software customized for copy number and cytogenetics research analysis and reporting. ChAS enables the user to view and summarize chromosomal aberrations, which may include copy number gain or loss, mosaicism, or loss/absence of heterozygosity (LOH/AOH).
- Resource
- RRID-Legacy
- 10 years ago - by Anonymous
LINKDATAGEN
Perl tool that generates linkage mapping input files using data from HAPMAP Phase III populations. It provides rudimentary error checks and is easily amended for personal linkage mapping preferences.
- Resource
- RRID-Legacy
- 10 years ago - by Anonymous
SnpSift
Software toolkit for filtering and manipulating annotated files. After annotation, the software's filter function can find relevant genomic variants in large data files.
- Resource
- RRID-Legacy
- 10 years ago - by Anonymous
NITRC-IR
Data repository for neuroimaging data in DlCOM and NIFTI formats. It allows users to search for and freely download publicly available data sets relating to normal subjects and those with diagnoses such as: schizophrenia, ADHD, autism, and Parkinson's disease.XNAT-based image registry that supports both NIfTI and DICOM images to promote re-use and integration of valuable NIH-funded data.
- Resource
- NIF
- 10 years ago - submitted by Matt Travers
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Genetically-Modified Mouse Core
Core facility that provides a centralized service to efficiently produce genetically altered mice for basic research, resulting in reduction in effort and cost to participating investigators.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core
Core facility that maintains a centralized repository of cells and reagents pertinent to digestive, liver and pancreatic disease research. It also provides training for labs in new cell culture (2D and 3D) techniques.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Host-Microbial Analytic and Repository Core
Core facility that provides services that will enhance the analysis of both host and microbial biological processes as well as facilitate translation into the clinical arena via human subject research.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
University of North Carolina Center for Gastrointestinal Biology and Disease Large Animal Models Core
Core facility that provides consultation and procedural expertise on development on novel models of relevant digestive diseases in large animals.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Molecular Pathology and Imaging Core
Core facility that provides histological services, equipment usage, and technical expertise to digestive and liver research projects.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases
Center that aims to unite investigators with interests in digestive, liver and pancreatic physiology and disease in the exploration of creative experimental approaches. The scientific focus of the Center revolves around the molecular controls of cellular growth and differentiation in the digestive tract, liver and pancreas with the goal of achieving a new level of integration in biology, pathobiology, and therapy.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
University of North Carolina Center for Gastrointestinal Biology and Disease Biostatistics and Data Management Core
Core facility that provides comprehensive statistical and data management services. Its statistical analysis services include study design, power and sample size analysis, randomization, statistical programming, consultation and the development of analysis plans, graphs, figures and reports.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
University of North Carolina Center for Gastrointestinal Biology and Disease Gnotobiotic Core
Core facility that supports animal model and basic research projects of CGIBD investigators. Investigators use this resource to examine physiologic and pathophysiologic differences in germ-free, gnotobiotic, and specific pathogen free colonized mice of various genetic backgrounds.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
University of North Carolina Center for Gastrointestinal Biology and Disease Histology Core
Core facility that provides a full range of histology services, encompassing routine and specialized grossing, tissue processing, paraffin embedding, microtomy, H&E and special staining, and immunohistochemistry. It also offers image analysis and consultations to CGIBD members and non-members.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
University of North Carolina Center for Gastrointestinal Biology and Disease Advanced Analytics Core
Core facility provides solutions for studying proteins, peptides, and other molecules, including mRNA and cDNA. The Core's immunotechnologies (IT) component provides consultation, ordering, and immunoassay services, and supports a variety of analytes in both traditional ELISA/EIA and xMAP-based multiplex bead assay formats.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
University of North Carolina Center for Gastrointestinal Biology and Disease
Center at UNC Chapel Hill and North Carolina State University for collaborative GI research. Its mission is to promote and enhance multidisciplinary digestive disease research.
- Resource
- SciCrunch
- 10 years ago - submitted by Isabella Froman
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