Curator Dashboard

Non-redundant collection of publicly annotated DNA, CDS, and protein sequences of protein coding intronless genes from human genome.

• Resource
• SciCrunch
• 9 years ago - submitted by Kristen Jensen

Web server for statistical, functional and integrative analysis of metabolomics data. Web based tool suite used for metabolomic data processing, normalization, multivariate statistical analysis, and data annotation, biomarker discovery and classification.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Cloud-based mass spectrometry data processing platform for metabolomics and lipidomics.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Database of known biochemical compounds collected from existing biochemical databases, as well as computationally generated human phase I and phase II metabolites of known compounds.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Metadata-centric, auto-curating repository designed for storage and querying of mass spectral records. It contains metabolite mass spectra, metadata and associated compounds.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Public repository of mass spectral data which allows users to search similar spectra on a peak-to-peak basis, on a neutral loss-to-neutral loss basis, or by the m/z value and molecular formula, search chemical compounds by substructures, and keyword search chemical compounds

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Ocean general circulation model; more specifically, a data-assimilative hybrid isopycnal-sigma-pressure (generalized) coordinate ocean model.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Matlab toolbox used to help analyze electrophysiological and behavioral data recorded from freely moving animals.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Cloud-based executable research platform for discovering and running scientific code. Code Ocean is designed to give researchers and developers a way to share, discover and run code published in academic journals and conferences. Users can upload code and data in various programming languages and link working code in a computational environment with the associated article, with Code Ocean assigning a Digital Object Identifier (DOI) to the algorithm.

• Resource
• dkNET
• 9 years ago - submitted by Maryann Martone

De novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 9 years ago - by Anonymous

Graph-based alignment of next generation sequencing reads to a population of genomes.

• Resource
• SciCrunch
• 9 years ago - by Anonymous

Commercial organization that provides services and products in global healthcare and diagnostics.

• Organization
• SciCrunch
• 9 years ago - submitted by Kristen Jensen

Reference implementation of the Common Workflow Language standards. It provides complete features and tools and comprehensive validation of CWL. The reference implementation consists of two packages. The cwltool package is the primary Python module containing the reference implementation in the cwltool module and console executable by the same name. The cwlref-runner package is optional and provides an additional entry point under the alias cwl-runner, which is the implementation-agnostic name for the default CWL interpreter installed on a host.

• Resource
• SciCrunch
• 9 years ago - submitted by Michael Crusoe

Software toolkit with various functions for the analysis of nucleosome and protein occupancy by sequencing.

• Resource
• SciCrunch
• 9 years ago - submitted by Kristen Jensen

Computer vision and machine learning software library which provides a common infrastructure for computer vision applications. The algorithms within the library can be used to detect and recognize faces, identify objects, classify human actions in videos, track camera movements and moving objects, extract 3D models of objects, produce 3D point clouds from stereo cameras, stitch images together to produce a high resolution image of an entire scene, find similar images from an image database, and follow eye movements, recognize scenery and establish markers to overlay it with augmented reality. It has C++, C, Python, Java and MATLAB interfaces.

• Resource
• SciCrunch
• 9 years ago - submitted by Kristen Jensen

Probabilistic atlas of human white matter tracts/regions underlying several well-known resting state brain networks. The atlas includes group probability maps for each network, as well as each individual tract that are aligned to both the SPM and MRIStudio ICBM templates.

• Resource
• NIF
• 9 years ago - submitted by Matt Travers

Collection of software tools for the computational analysis of brain anatomy with MRI data. It includes automated software tools from surface reconstruction to their mapping via metric optimization in the Laplace-Beltrami embedding space. It is general and can be applied to a wide range of anatomical structures including cortical, sub-cortical, and fiber bundle surfaces.

• Resource
• NIF
• 9 years ago - submitted by Matt Travers

Data set of addiction studies compiled by the NeuroImaging and Analysis Group (NIAG).

• Resource
• NIF
• 9 years ago - submitted by Matt Travers

PANDORA is a Matlab Toolbox for analyzing neuronal electrophysiology data and constructing databases

• RRID-Legacy
• 9 years ago - submitted by Cengiz Gunay

Instrument and software tool used to visualize, trace, analyze, and process white matter fiber tracts of Diffusion Tensor Imaging (DTI) data in real-time. It supports pre-operative surgical planning, post-surgery evaluation, and general evaluation of fiber tracts around tumors and lesions in connection with functional areas.

• Resource
• SciCrunch
• 9 years ago - submitted by Yueling Li