Curator Dashboard

Software for a Bayesian approach for evaluating representational models that specify how complex patterns of neural activity relate to visual stimuli, motor actions, or abstract thoughts. PCM evaluates the ability of models to predict novel brain activity patterns and integrates over all possible activity profiles and computes the marginal likelihood of the data under the activity profile distribution specified by the representational model.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous

Software toolbox for SPM that is aimed at facilitating the interpretation of fMRI data in the context of intrinsic connectivity networks (ICNs) by describing fMRI maps in function-oriented, objective and quantitative way using a set of 15 metrics conceived to quantify the degree of ‘engagement’ of ICNs for any given statistical map of interest. Besides the functionally-derived atlasing capabilities (based on the BrainMap ICN data) the toolbox provides anatomy-based atlasing (based on the JHU and Brainnetome Atlas data), as well.

• Resource
• NIF
• 9 years ago - submitted by Matt Travers

Consortium studying the regulation and alternative splicing of gene expression in multiple tissues from human brains. The UKBEC dataset comprises of brains from individuals free of neurodegenerative disorders.

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• NIF
• 9 years ago - submitted by Maryann Martone

Database for the UK Brain Expression Consortium (UKBEC) dataset that comprises of brains from individuals free of neurodegenerative disorders. The aim of Braineac is to release to the scientific community a valid instrument to investigate the genes and SNPs associated with neurological disorders.

• Resource
• NIF
• 9 years ago - submitted by Maryann Martone

Image repository that allows researchers to interactively explore a collection of cellular-resolution colour histology images detailing mouse development. The original histological sections have been re-digitised at high resolution, in colour and in collaboration with Elsevier, the eHistology Atlas provides the annotations as presented in the original printed version.

• Resource
• SciCrunch
• 9 years ago - submitted by Chris Armit

Clinical trial by the Chronic Prostatitis Collaborative Research Network (CPCRN chronic prostatitis/chronic pelvic pain syndrome (CP/CPPS)) that was established to conduct randomized clinical trials of promising therapies for this syndrome. In response to the findings of previous trials, the CPCRN conducted a multicenter, randomized, placebo-controlled trial of alfuzosin to determine whether the symptoms CP/CPPS could be reduced in men who had recently received a diagnosis of CP/CPPS and who had not previously been treated with this class of drug.

• Resource
• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Project that aims to standardize Hemoglobin A1c test results to those of the Diabetes Control and Complications Trial (DCCT) and United Kingdom Prospective Diabetes Study (UKPDS) which established the direct relationships between HbA1c levels and outcome risks in patients with diabetes.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Algorithm for measuring pairwise neuronal similarity. NBLAST considers both position and local geometry and works by decomposing a query and target neuron into short segments; matched segment pairs are scored using a log-likelihood ratio scoring matrix empirically defined by the statistics of real matches and non-matches.

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• SciCrunch
• 9 years ago - submitted by Devon Gilpatrick

Research project that aims to learn more about the number of people who have monogenic diabetes, why and how it happens, and how best to treat it. Any adult or child with a known genetic cause of diabetes may join the MODY Registry.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Web application to perform automated model construction and genome annotation for large-scale metabolic networks. Platform for accessing, analyzing and manipulating genome-scale metabolic networks (GSM) as well as biochemical pathways.

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• SciCrunch
• 9 years ago - by Anonymous

Project that aims to provide a collection of Gold Standard gene phylogenies to the scientific community. This set of reference gene trees is suitable for phylogenomic databases to assess their current quality status, measure changes following new database releases and diagnose improvements subsequent to an upgrade of the analysis procedure.

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• SciCrunch
• 9 years ago - by Anonymous

Software for scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Canu is a fork of the Celera Assembler and is designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).

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• SciCrunch
• 9 years ago - by Anonymous

Software toolkit for analyzing nanopore sequence data.

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• SciCrunch
• 9 years ago - by Anonymous

Software that analyzes intestinal microbiota data. This environment is composed of a framework to process and analyze microbiota data from raw sequences to taxonomic and functional assignations.

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• SciCrunch
• 9 years ago - submitted by Bérénice Batut

Brain-CODE is a large-scale informatics platform that manages the acquisition and storage of multidimensional data collected from participants with a variety of brain disorders.

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• NIF
• 9 years ago - by Anonymous

Source code for processing continuous local field potentials (LFP). The interface implements different documented algorithms for HFO detection, and provides several tools for signal visualization and manipulation.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software toolkit designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configuration files, and generate native makefiles and workspaces that can be used in the compiler environment of your choice.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Algorithm for MATLAB and the EEGLAB toolbox that enables the automatic detection of independent components from an ICA that represent event-related brain potentials. It performs automatic Independent Component (IC) selection with respect to the contributions of the ICs to a certain ERP.

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• RRID-Legacy
• 9 years ago - by Anonymous

Python software package that offers quantitative PET image reconstruction and analysis with high accuracy and precision. It is written in CUDA C and embedded in Python C extensions.

• RRID-Legacy
• 9 years ago - submitted by David Kennedy

Software for 3D/4D image reconstruction. UCSF ChimeraX is the next-generation molecular visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera.

• Resource
• RRID-Legacy
• 9 years ago - by Anonymous