Curator Dashboard

Simulation software which can execute neural network models specified in the SpineML format (an extension of the INCF's NineML). It is used as the canonical simulator backend by SpineCreator and translates the SpineML specification of the model into object code and a SystemML specification of the network.

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• SciCrunch
• 9 years ago - submitted by Sebastian James

The NAD/NADH-Glo and NADP/NADPH-Glo Assays are bioluminescent, homogeneous, single-reagent-addition methods to rapidly detect NAD+ and NADH and NADP+ and NADPH levels in cells and enzymatic reactions. Current methods to detect nicotinamide adenine dinucleotides lack sensitivity and reproducibility and require sample manipulation and large numbers of cells for cell-based applications. The assay is easily adapted for inhibitor screening in high-throughput formats. The sensitivity and robustness of the assay chemistry allow fewer cells to be used to detect individual nucleotides directly in multiwell plates or analysis of enzymes with low activity or with low Km values.

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• RRID-Legacy
• 9 years ago - submitted by Peter LoCoco

Search engine for querying novel microbiome samples against a comprehensive database of curated samples. Visibiome accepts rRNA data in the form of BIOM files.

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• RRID-Legacy
• 9 years ago - by Anonymous

Graphical editor software which can be used to create and edit neural network models. Models can be read from, and saved in the SpineML format.

• RRID-Legacy
• 9 years ago - submitted by Sebastian James

Software for data analysis and graphing. The program also allows the user to create templates for repetitive tasks and perform batch operations from the user interface without the need for programming., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• SciCrunch
• 9 years ago - submitted by Yueling Li

Software that creates graphs from brain scan data. ndmg is a 1-click structural connectome estimation pipeline and is the successor of the MRCAP, MIGRAINE, and m2g pipelines.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software toolkit for data-driven validation of neuron and ion channel models using SciUnit. NeuronUnit implements an interface to several simulators and model description languages, handles test calculations according to domain standards, and enables automated construction of tests based on data from several major public data repositories.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

A package for data-driven validation of neuron and ion channel models using SciUnit

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Graphical user interface for exploring hypotheses of correlations between neural activity in regions of the brain and behavior for Drosophila melanogaster. These correlation hypotheses are the result of our thermogenetic neural activation screen from the Janelia GAL4 collection.

• SciCrunch
• 9 years ago - submitted by Anita Bandrowski

WebGL-based viewer for volumetric data. It is capable of displaying arbitrary (non axis-aligned) cross-sectional views of volumetric data, as well as 3-D meshes and line-segment based models (skeletons).

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Software that implements Infomax ICA, which is an algorithm to perform Independent Component Analysis, in CUDA (a parallel computing platform and programming model).

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• RRID-Legacy
• 9 years ago - submitted by Federico Raimondo

Web tool written in R for generation of box plots with R packages shiny, beanplot4, vioplot, beeswarm and RColorBrewer, and hosted on shiny server to allow for interactive data analysis. Data are held temporarily and discarded as soon as session terminates.Represents both summary statistics and distribution of primary data. Enables visualization of minimum, lower quartile, median, upper quartile and maximum of any data set.Data matrix can be uploaded as file or pasted into application. May be downloaded to run locally or as virtual machine for VMware and VirtualBox.

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• RRID-Legacy
• 9 years ago - submitted by Elcin Unal

Portal enables browsing, searching, and analysis of human genetic information linked to cerebrovascular disease and related traits, while protecting the integrity and confidentiality of the underlying data.

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• SciCrunch
• 9 years ago - submitted by Ko-Wei Lin

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1,2023. Analytics platform with various sub platforms, each with specific performance capabilities for tasks such as data analysis, data management, data visualization, and data mining procedures.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software customized for copy number and cytogenetics research analysis and reporting. ChAS enables the user to view and summarize chromosomal aberrations, which may include copy number gain or loss, mosaicism, or loss/absence of heterozygosity (LOH/AOH).

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• RRID-Legacy
• 9 years ago - by Anonymous

Perl tool that generates linkage mapping input files using data from HAPMAP Phase III populations. It provides rudimentary error checks and is easily amended for personal linkage mapping preferences.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software toolkit for filtering and manipulating annotated files. After annotation, the software's filter function can find relevant genomic variants in large data files.

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• RRID-Legacy
• 9 years ago - by Anonymous

Data repository for neuroimaging data in DlCOM and NIFTI formats. It allows users to search for and freely download publicly available data sets relating to normal subjects and those with diagnoses such as: schizophrenia, ADHD, autism, and Parkinson's disease.XNAT-based image registry that supports both NIfTI and DICOM images to promote re-use and integration of valuable NIH-funded data.

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• NIF
• 9 years ago - submitted by Matt Travers

Core facility that provides a centralized service to efficiently produce genetically altered mice for basic research, resulting in reduction in effort and cost to participating investigators.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Core facility that maintains a centralized repository of cells and reagents pertinent to digestive, liver and pancreatic disease research. It also provides training for labs in new cell culture (2D and 3D) techniques.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman