Curator Dashboard

Software for scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Canu is a fork of the Celera Assembler and is designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).

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• SciCrunch
• 9 years ago - by Anonymous

Software toolkit for analyzing nanopore sequence data.

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• SciCrunch
• 9 years ago - by Anonymous

Software that analyzes intestinal microbiota data. This environment is composed of a framework to process and analyze microbiota data from raw sequences to taxonomic and functional assignations.

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• SciCrunch
• 9 years ago - submitted by Bérénice Batut

Brain-CODE is a large-scale informatics platform that manages the acquisition and storage of multidimensional data collected from participants with a variety of brain disorders.

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• NIF
• 9 years ago - by Anonymous

Source code for processing continuous local field potentials (LFP). The interface implements different documented algorithms for HFO detection, and provides several tools for signal visualization and manipulation.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software toolkit designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configuration files, and generate native makefiles and workspaces that can be used in the compiler environment of your choice.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Algorithm for MATLAB and the EEGLAB toolbox that enables the automatic detection of independent components from an ICA that represent event-related brain potentials. It performs automatic Independent Component (IC) selection with respect to the contributions of the ICs to a certain ERP.

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• RRID-Legacy
• 9 years ago - by Anonymous

Python software package that offers quantitative PET image reconstruction and analysis with high accuracy and precision. It is written in CUDA C and embedded in Python C extensions.

• RRID-Legacy
• 9 years ago - submitted by David Kennedy

Software for 3D/4D image reconstruction. UCSF ChimeraX is the next-generation molecular visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera.

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• RRID-Legacy
• 9 years ago - by Anonymous

Software package to elucidate complex interactions between subsets of neuroanatomical features and subsets of cognitive features. briancog specializes in differential correlation analysis.

• RRID-Legacy
• 9 years ago - submitted by David Kennedy

Software that is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

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• SciCrunch
• 9 years ago - submitted by Michael Li

Framework for spike sorting that includes tools for pre-processing, spike detection, spike sorting, and sorting quality evaluation. It is principally designed for sorting of single-wire microwire recordings in humans, but is being used for other types of recordings as well.

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• RRID-Legacy
• 9 years ago - by Anonymous

Artificial intelligence image analysis platform that facilitates life science research. It offers data analysis, processing functions, and security features to accelerate research productivity.

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• RRID-Legacy
• 9 years ago - by Anonymous

Biobank for reagents such as antibodies, mice, and cell lines. Ximbio aims to maximise scientists' commercial opportunities and encourage the sharing of tools and information among the research community.

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• RRID-Legacy
• 9 years ago - submitted by Mason Pairish

Software for a de novo OTU-picking pipeline integrating single- and paired-end 16S sequence tags. It is designed to take Illumina paired-end sequencing reads as input and output the OTU BIOM table, together with their representative sequences and a phylogenetic tree of OTUs.

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• SciCrunch
• 9 years ago - submitted by Xianfeng Chen

Source code that allows users to simultaneously track the movement of individual paws during spontaneous grooming episodes and walking in multiple freely-behaving mice/rats. This toolbox provides a simple platform to perform trajectory analysis of paw movement.

• SciCrunch
• 9 years ago - submitted by Anita Bandrowski

Data services that provides a platform for comprehensive and reproducible management and sharing of neuroscience data. Building on well established versioning technology, GIN offers the power of a web based repository management service combined with a distributed file storage.

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• SciCrunch
• 9 years ago - submitted by Thomas Wachtler

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• test123411
• 9 years ago - submitted by test test

PERL is a clinical trial for people with type 1 diabetes who have early signs of kidney problems. Its goal is to test a new way to reduce loss of kidney function using a safe and inexpensive medicine.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Project portal for a collaboration between Boston Children’s Hospital, Cincinnati Children’s Hospital Medical Center, and the University of California Los Angeles with funding from NIH NCATS. It aims to support investigators to rapidly translate complex gene and cell therapies to early phase, investigator-initiated clinical trials.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin