Curator Dashboard

Interactive database of miRNA targets and miRNA-regulated gene networks to integrate expression data from hundreds of cellular and tissue conditions. Website includes CoMeTa corank lists and additional targets for all of human miRNAs, their associated pathways resulting from COOL analysis, and miRNA communities with their corresponding enriched functional categories. Website is searchable by miRNA, target gene, or biological function of interest, and represents unique resource to gain insight into miRNA-controlled gene networks and functions.

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• RRID-Legacy
• 7 years ago - by Anonymous

Collection of single miRNAs that regulate pathways, gene ontologies and other categories, hence complementing available miRNA target enrichment programs, tailored for miRNA sets. New dictionary on microRNAs and target pathways. Database to augment available target pathway web-servers by providing researches access to information which pathways are regulated by miRNA, which miRNAs target pathway and how specific regulations are.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web based manually curated experimentally validated database of microRNA-Target interactions. Collection of MTIs data validated experimentally by reporter assays, western blot, or microarray experiments with overexpression or knockdown of miRNAs.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web tool for integrating human and mouse microRNAs in pathways.Pathway analysis web-server, providing statistics, while being able to accommodate advanced pipelines. Web server for assessment of miRNA regulatory roles and identification of controlled pathways. Supports all analyses for KEGG molecular pathways and Gene Ontology (GO) in seven species (Homo sapiens, Mus musculus, Rattus norvegicus, Drosophila melanogaster, Caenorhabditis elegans, Gallus gallus and Danio rerio).DIANA miRPath v.2.0 includes investigating combinatorial effect of microRNAs in pathways.DIANA-miRPath v3.0 includes deciphering microRNA function with experimental support., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web user interface for interaction predictions of human gene networks and integrative analysis of user data types that takes advantage of data from diverse tissue and cell-lineage origins. Predicts presence of functional association and interaction type among human genes or its protein products on whole genome scale. Used to analyze experimetnal gene in context of interaction networks.

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• RRID-Legacy
• 7 years ago - by Anonymous

Human miRNA tissue atlas. Database showing distribution of miRNA expression across human tissues.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to correct for batch effects in single-cell expression data using fast version of mutual nearest neighbors (MNN) method.

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• RRID-Legacy
• 7 years ago - by Anonymous

Data analysis and 3D visualization for connectomics and serial electron microscopy. This toolbox provides missing 3D visualization and analysis tools for cylinder-based annotations. Integration with contour, skeleton based annotations and common morphology file formats is also supported.

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• RRID-Legacy
• 7 years ago - by Anonymous

Companion analytical software for Neurolucida and Neurolucida 360, designed to perform extensive morphometric analysis on neuron reconstructions, serial section reconstructions, and brain maps.

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• SciCrunch
• 7 years ago - submitted by Maci Heal

Software for automatic identification and delineation of brain regions within experimental mouse brain sections. NeuroInfo registers serial section images of any orientation to Allen Mouse Brain Atlas, corrects for distortion due to histological processing, delineates anatomies in experimental section, and detects and reports on cell number within selected anatomies.

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• SciCrunch
• 7 years ago - submitted by Maci Heal

Software as set of commandline tools with GUI frontend that performs data reconstruction and fiber tracking on diffusion MR images. It does preparation work for TrackVis. Software Package for diffusion imaging data processing and tractography.

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• SciCrunch
• 7 years ago - by Anonymous

Software tool as set of analysis pipelines that process chromium single cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis by 10xGenomics.

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• SciCrunch
• 7 years ago - by Anonymous

Software R package for analysis of phylogenetics and evolution. Environment for modern phylogenetics and evolutionary analyses in R.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for multimodal human brain imaging data analysis. Computational pipeline for discovery science of human brain connectomes at macroscale with multimodal magnetic resonance imaging technologies.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software as open source, multiplatform tool used to segment structures in 3D medical images.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as open source medical image viewer. Enables to browse and visualize medical imaging libraries.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software R package as search tool for single cell RNA-seq data by gene lists. Builds index from scRNA-seq datasets which organizes information in suitable and compact manner so that datasets can be very efficiently searched for either cells or cell types in which given list of genes is expressed.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for unsupervised projection of single cell RNA-seq data. Used for projecting cells from scRNA-seq data set onto cell types or individual cells from other experiments.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software package for graphical visualization of organellar genomes. Converts annotations in GenBank format into graphical maps. Used to create visual representations of circular and linear annotated genome sequences provided as GenBank files or accession numbers.

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• SciCrunch
• 7 years ago - submitted by Chao Cheng

Software tool for rapid and accurate annotation of organelle genomes, in particular chloroplast genomes.

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• SciCrunch
• 7 years ago - submitted by Chao Cheng