Curator Dashboard

Open access database of all types of genetic variation data from all species. Users can download data from any study, or submit their own data to archive. You can also query all variants by study, gene, chromosomal location or dbSNP identifier using our Variant Browser.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Software Matlab toolbox for multivariate analysis of functional and structural MRI data. Software package for multivariate analyses of functional imaging data.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web application for quantitative KInetic MOdels of biological SYStems. Platform includes public data repository of relevant published measurements, including metabolite concentrations, flux data, and enzyme measurements and tools in order to build ODE-based kinetic model. Designed to search, exchange and disseminate experimental data and associated kinetic models for systems modeling community.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Storage and search platform supported by Beilstein-Institut that incorporates STRENDA Guidelines. For authors who prepare manuscript containing functional enzymology data, STRENDA DB provides means to ensure that data sets are complete and valid before submitting them to journal.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Public repository of reference image datasets from published scientific studies. Platform for publishing, mining and integrating bioimaging data, following FAIR principles and Euro-BioImaging/ELIXIR imaging strategy using OMERO and Bio-Formats open source software built by Open Microscopy Environment. Deployed on OpenStack cloud running on EMBL-EBI’s Embassy resource, it includes image data linked to independent studies from genetic, RNAi, chemical, localisation and geographic high content screens, super resolution microscopy, and digital pathology.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Medical image repository to store medical research data.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Software tool for identifying K mAjor cell population groups in single-cell RNA-seq analysis. Algorithm identifying major cell groups that improves differentiating by tuning parameters for clustering. Using multiple datasets improves identification of major cell types and facilitates cell ontology curation.

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• SciCrunch
• 7 years ago - submitted by Mehdi Pirooznia

Software based on deep learning model for auto detect corneal diseases. Sample may contain multiple categories. After learning thousands of corneal images, you can make automatic judgments on subtypes of cornea.

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• RRID-Legacy
• 7 years ago - submitted by Youwen Guo

Software package for metagenomics data. Discovers accurate predictive signatures and provides unprecedented interpretability. Package contains three methods for suppervised learning based on ternary coefficients. Used to discover classification models for quantitative metagenomics data.

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• SciCrunch
• 7 years ago - submitted by Edi Prifti

Software tool to incorporate newly detected repeat overlapping alignments into pairwise alignment chains. It only aligns local genomic regions that are bounded by colinear aligning blocks, as provided in chains, which makes it feasible to consider all seeds including those that overlap repetitive regions. Used to improve genome alignments by incorporating previously undetected local alignments between repetitive sequences.

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• SciCrunch
• 7 years ago - submitted by Ekaterina Osipova

Software tool as graphical user interface designed to assist with manual annotation of different parts of the inflorescence. Used in deep plant phenotyping. Works with DeepPod.

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• SciCrunch
• 7 years ago - submitted by Azam Hamidinekoo

Software tool as preprocessing pipeline for diffusion MRI. Pipeline used for preprocessing of diverse dMRI data. Workflow dispenses of manual intervention, thereby ensuring reproducibility of results.

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• RRID-Legacy
• 7 years ago - submitted by Oscar Esteban

Software package for statistical analysis by SAS Institute Inc, Cary, NC.

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• RRID-Legacy
• 7 years ago - submitted by Bo-Chul SHIN

Software tool for analysis of mass spectrometry imaging data implemented in Galaxy framework. Provides options to analyze mass spectrometry imaging data in imzML file format, including quality control, visualization, preprocessing, statistical analysis, image co-registration and feature identification.Galaxy docker container for mass spectrometry imaging.

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• SciCrunch
• 7 years ago - submitted by Melanie Föll

Mosaic software features apps designed to help you derive deeper insights from videos of large scale circuit dynamics by Inscopix Inc.

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• RRID-Legacy
• 7 years ago - by Anonymous

Miniature microscope for imaging calcium activity in neural circuits by Inscopix, Inc. Allows to record real-time brain cell activity and calcium signaling in deep brain regions while the animal moves freely.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for subject wise networks from morphometric features and structural MRI. Single subject morphometric networks for neuroscience connectivity applications.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for assessment of predictive power, with support for neuroimaging features. Easy machine learning and standardized predictive analysis of biomarkers.

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• RRID-Legacy
• 7 years ago - by Anonymous

Behavior instrument, cage allows for assess to home cage behavior and cognitive performance of up to 16 individual mice or rats separately while they are living in social environment. This unique experimental setup fosters natural social behavior in biologically relevant, enriched but highly standardized home cage context. Minimizes need for handling and human intervention, thereby increasing task validity, data reproducibility and ensuring high level of animal welfare.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

An ontology for describing the complex phenotypes of neurons.

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• dkNET
• 7 years ago - submitted by Maryann Martone