Curator Dashboard

Nonhuman Primate reference transcriptome resource consisting of deep sequencing complete transcriptomes (RNA-seq) from multiple NHP species.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Atlases enable alignment of individual scans to improve localization and statistical power of results, and allow comparison of results between studies and institutions. Set of multi subject atlas templates is constructed specifically for functional and structural imaging studies of rhesus macaque.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software Python package to automate building of ML pipelines by combining flexible expression tree representation of pipelines with stochastic search algorithms such as genetic programming.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Knockout Mouse Phenotyping Project, JAX information about their contributions to KOMP2 project. Project to generate and phenotype single gene KO mouse strains from KOMP ES cell lines. Strains are phenotyped using protocols in pipeline designed by International Mouse Phenotyping Consortium. There are three NIH-funded phenotyping centers in United States: JAX, BaSH Consortium (Baylor College of Medicine, the Wellcome Trust Sanger Institute and MRC Harwell), and the DTCC Consortium (University of California at Davis, the Toronto Center for Phenogenomics, Children’s Hospital Oakland Research Institute (CHORI) and Charles River ).

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Genome Browser for study of 3D genome organization and gene regulation and data visualization. Used to visualizing chromatin interaction data, browse other omics data such as ChIP-Seq or RNA-Seq for same genomic region, and gain complete view of both regulatory landscape and 3D genome structure for any given gene., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Searchable database of mouse genes, DNA segments, cytogenetic markers and QTLs. MGI provides access to integrated data on mouse genes and genome features, from sequences and genomic maps to gene expression and disease models.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Enables comparative phenotype analysis, searches for human disease models, and hypothesis generation by providing access to spontaneous, induced, and genetically engineered mutations and their strain-specific phenotypes.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Collection of published and potential mouse models of human disease, discovery of candidate genes and investigation of phenotypic similarity between mouse models and human patients. Mouse mutation, and phenotype and disease model data from Mouse Genome Informatics database are integrated with human gene to disease relationships from the National Center for Biotechnology Information and Online Mendelian Inheritance in Man and human disease to phenotype relationships from the Human Phenotype Ontology.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Platform that can be used to annotate, prioritize, visualize and interpret GWAS results. To submit your own GWAS, login is required for security reason. You can browse public results of FUMA from Browse Public Results without registration or login.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

MGI GO project provides functional annotations for mouse gene products using Gene Ontology. Functional annotation using Gene Ontology (GO).

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

MGI integrates comparative data on inbred strain characteristics including SNPs, polymorphisms, and quantitative phenotypes.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

MGI contains homology information for mouse, human, rat, chimp, dog and other species. Complete set of human, chimpanzee, rhesus macaque, dog, cattle, rat, chicken, western clawed frog and zebrafish Homology Classes for mouse genes. Report includes Chromosome and EntrezGene and OMIM IDs. Report of Human and Mouse Homology Classes sorted by HomoloGene ID includes associated nucleotide and protein sequences, Chromosome and OMIM IDs. Report of Human and Mouse Homology with phenotype annotations. Several additional MGI reports are available, including those for Gene Ontology, Phenotypes and Nomenclature.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software tool to access various mouse genome information in batch format. Batch data and analysis tools.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software resource for vertebrate gene nomenclature. Database of gene symbols. Coordinates with vertebrate nomenclature committees, MGNC (mouse), RGNC (rat), CGNC (chicken), AGNC (Anole green lizard), XNC (Xenopus frog) and ZNC (zebrafish), to ensure genes are named in line with their human homologs.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Database of different optogenetics resources like hardware, protocols, sequence information.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Information from JAX about their contributions to KOMP project coordinated by International Mouse Phenotyping Consortium. National Institutes of Health has funded three KOMP2 centers in United States, including one at Jackson Laboratory, to work together on task of producing and phenotyping mice to establish resource of knockout mice and related database of gene function.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Authoritative source of official names for mouse genes, alleles, and strains. Nomenclature follows rules and guidelines established by International Committee on Standardized Genetic Nomenclature for Mice.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Data detailing transgene expression in Cre and other driver lines for adult and developing brain. Experiments include colorimetric in situ hybridization, fluorescent in situ hybridization and other histological methods. Expression maps of transgenic Cre and other driver lines in mice.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Project provides transgenic BAC-Cre recombinase driver lines that allow for cell-specific gene manipulations in central nervous system of mouse. Gene Expression Nervous System Atlas Project provides Cre driver lines that will target selected neuronal or glial populations in brain and spinal cord. Cells can be ordered from MMRRC.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Mouse lines expressing proteins that activate, inhibit or detect neuronal activity are available from The Jackson Laboratory Repository. Many of these strains have been generated by HHMI Janelia Farm GENIE Project or by Allen Institute for Brain Science.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger