Curator Dashboard

Software tool as script used to design primers for homoeologs, to amplify either homoeolog specific or all homoeologs.

• Resource
• SciCrunch
• 7 years ago - submitted by Fu-Hao Lu

Software tool as pipeline to map ATAC-seq data to large genome, for example, for wheat. It splits large genome files into parts and do mapping and then finally merge them.

• Resource
• SciCrunch
• 7 years ago - submitted by Fu-Hao Lu

Software tool as pipeline to make anntotations using cDNA and CDS sequences.

• Resource
• SciCrunch
• 7 years ago - submitted by Fu-Hao Lu

Software tool as Autorun Evidence Modeler. Requires EVidenceModeler (aka EVM) software which combines ab into gene predictions and protein and transcript alignments into weighted consensus gene structures.

• Resource
• SciCrunch
• 7 years ago - submitted by Fu-Hao Lu

Software tool to generate hints for Augustus in ab initio gene prediction using 2 step mapping by Gsnap.

• Resource
• SciCrunch
• 7 years ago - submitted by Fu-Hao Lu

Software package for analysis of single particle diffusion trajectories, where diffusion constants switch randomly according to Markov process. Analytical tool to combine information from thousands of short single-molecule trajectories of intracellularly diffusing proteins. Has ability to learn number of diffusive states directly from data, in addition to model parameters such as transition rates and diffusion constants.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Xiaolin Nan

Professional feed formulation software for Windows 10 and Macs by Agricultural Software Consultants Inc. Complete feed formulation solution for professional nutritionists and feed producers. Software offers ingredient databases for various domesticated and wild species.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Rotor-Gene real-time analysis software system for ROTOR GENE 6000 REAL-TIME PCR machine. Software has been refined to provide an intuitive, Wizard driven interface, enabling flexibility and automation. Build-in extensive analysis, graphing and statistical functions. Unlimited use software license for Windows XP, Pentium IV (2GHz) or higher PC.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

LabChart data analysis software creates a platform for all of your recording devices to work together, allowing you to acquire biological signals from multiple sources simultaneously and apply advanced calculations and plots as your experiment unfolds. LabChart Reader is free version of software that allows to analyse with some limitations. LabChart Reader doesn’t allow saving of data - export image only. Has data pad for analysis.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Collection of brief summaries of various genes and proteins implicated in pathophysiology of Alzheimer’s disease and other neurodegenerative disorders. It will be expanded over time and updated periodically in order to reflect current state of knowledge.

• Resource
• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Pre-trained biomedical language representation model for biomedical text mining. This repository provides fine-tuning codes of BioBERT, language representation model for biomedical domain, especially designed for biomedical text mining tasks such as biomedical named entity recognition, relation extraction, question answering, etc.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Database for insights into single cell gene expression profiles during human developmental processes. Interactive database provides DE gene lists in each developmental pathway, t-SNE map, and GO and KEGG enrichment analysis based on these differential genes.

• Resource
• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software tool as bioinformatics analysis pipeline used for RNA sequencing data. Workflow processes raw data from FastQ inputs, aligns reads, generates gene and transcript counts, and performs quality control on results.

• Resource
• SciCrunch
• 7 years ago - submitted by Fabiano Menegidio

Software tool as epigenomics analysis pipeline for analysis of ChIP-Seq and RNA-Seq data using Docker images containing Galaxy and Jupyter.

• Resource
• SciCrunch
• 7 years ago - submitted by Miriam Paya Milans

Cryostat for routine histology and cryosectioning including critical applications such as Mohs surgery. Brain sectioning. Actively cooled quick freezing shelf with defrost function and refrigeration system are provided.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for neuron timelapse reconstruction, registration and analysis for Dynamic Morphometrics.

• Resource
• SciCrunch
• 7 years ago - submitted by Patrick Coleman

EU data infrastructure with workflow connectivity layer. Common Workflow Language. Project pioneers methodologies and integrated set of supporting technologies that will transform European RIs productivity and rate of innovation when three challenges – extreme data, extreme computation and extreme complexity – are faced simultaneously.

• Resource
• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

Platform for reproducible research. Code base for publishing data. For merging science and cyberinfrastructure pathways. Data Infrastructure Building Block (DIBBS) initiative to build scalable, open source, web-based, multi-user platform for reproducible research enabling creation, publication, and execution of tales – executable research objects that capture data, code, and complete software environment used to produce research findings. To enable researchers to define and create computational environment to manage complete conduct of computational experiments and expose them for analysis and reproducibility.

• Resource
• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

To identify role of pharmacokinetic and pharmacodynamic gene variation in nicotine dependence phenotypes, with focus on prospective smoking cessation and medication response.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Project to facilitate primate research by enabling neuroscience researchers to access collections either on-site or via the web for use in their own research programs. Collections of macaque brain tissue available to investigators worldwide to provide cost effective means for researchers to conduct de novo studies on non-human primate brain.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger