Curator Dashboard

Repository to make datasets resulting from NIH funded research more accessible, citable, shareable, and discoverable. Data submitted will be reviewed to ensure there is no personally identifiable information in data and metadata prior to being published and in line with FAIR -Findable, Accessible, Interoperable, and Reusable principles. Data published on Figshare is assigned persistent, citable DOI (Digital Object Identifier) and is discoverable in Google, Google Scholar, Google Dataset Search, and more.Complited on July,2020. Researches can continue to share NIH funded data and other research product on figshare.com.

• Resource
• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Web server to implement whole genotype imputation workflow for efficient parallelization of computationally intensive tasks. Service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity. Used to find haplotype segments and reference panel of sequenced genomes, assign genotypes at untyped markers, improve genome coverage, facilitate comparison and combination of studies that use different marker panels, increase power to detect genetic association, and guide fine mapping.

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• SciCrunch
• 7 years ago - by Anonymous

Software tool as text-mining engine that structures and standardizes knowledge of immune intercellular communication. Knowledgebase contains interactions and separate mentions of cells or cytokines in context of thousands of diseases. Intercellular interactions were text-mined from all available PubMed abstracts across disease conditions.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Database of associations between traits and variants using UK Biobank cohort. Searchable atlas of genetic associations. Assists researchers to query UK Biobank. Provides unbiased view of phenotype and genotype associations across of traits.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to represent ontologies and data described using ontologies as Neo4j graph. Ontology serving middleware tool using Neo4J as base server, able to ingest ttl files, and serve them to quickly create services that can underpin autocomplete, term lookup and tree traversal.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool for experimental design, sample size determination and analysis by Tempest Technologies.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to organize, retrieve, and share genome analysis resources. Reference genome assembly asset manager. In addition to genome indexes, can manage any files related to reference genomes, including sequences and annotation files. Includes command line interface and server application that provides RESTful API, so it is useful for both tool development and analysis.

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• SciCrunch
• 7 years ago - submitted by Nathan Sheffield

Software package provides interface from R to JAGS library for Bayesian data analysis. Program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.

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• RRID-Legacy
• 7 years ago - by Anonymous

Sapienza University of Rome and Cineca consortium portal. Used for analyzing published RNAseq transcriptomes obtained from brain of mice exposed to different kinds of stress protocols, to generate database of stress related differentially expressed genes and to identify factors contributing to vulnerability or resistance to stress. Allows to query database of RNAseq data.

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• RRID-Legacy
• 7 years ago - by Anonymous

Free, cloud-based platform for publishing, sharing, and processing standardized neurophysiology data, primarily using the Neurodata Without Borders (NWB) format. Supported by the BRAIN Initiative, it enables researchers to collaborate, reuse datasets, and adhere to FAIR data principles.

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• SciCrunch
• 7 years ago - submitted by Jeffrey Grethe

Carl Zeiss Stemi SV6 Stereomicroscope. Manufacturer: ZEISS. Model: Stemi SV6 Stereomicroscope. This equipment is out of production. Available from the third party sellers.

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• RRID-Legacy
• 7 years ago - submitted by Eliane Borges

Laboratory to support scientific research in system of multi user operation of UFPR. Available equipment in electron microscopy.

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• RRID-Legacy
• 7 years ago - submitted by Eliane Borges

Software tool to visualize and analyze transcriptomics data and transcriptomic cell types for mouse and human, all directly in web browser. To explore gene expression heatmap across cell types in datasets, search for genes of interest, explore tSNE visualization, colored by cell types or expression of genes of interest, visualize dataset’s sampling strategy to see how cells and nuclei were sampled across brain areas, cortical layer, and other dimensions, find cell type of interest in one visualization and see its characteristics in different visualization.Used for Allen Brain Map Cell Types Database to Browse Data: Human - Multiple Cortical Areas, and Mouse - Cortex and Hippocampus.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Atlas for studies of older adult brain. Includes T1-weighted template of older adult brain and tissue probability maps. Exhibits high image sharpness, provides higher inter-subject spatial normalization accuracy compared to other standardized templates and similar normalization accuracy to well-constructed study-specific templates.

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• NIF
• 7 years ago - by Anonymous

Repository to share analysis procedure, data and help readers or reviewers to know more detail of this work, reproduce or make use of results they are interested in.

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• RRID-Legacy
• 7 years ago - submitted by Shixiang Wang

Japanese manufacturer of optics and reprography products specializing in microscopes and thermometers.

• Organization
• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

Danish, privately owned company specializing in non-invasive stimulation systems for treatment of major depressive disorder and neuroscience research based on use of transcranial magnetic stimulation.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool as scripts for calculating NMR chemical shifts. Warning - this group of Python scripts used to process NMR data, described in Willoughby et al, 2014, has been found to contain bug. Please see PMID:31591889.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

National research resource to provide interactive views of publicly available All of Us Research Program participant data including electronic health record data, biospecimens, surveys, and other measures taken at time of participant enrollment. Data platform will be open to researchers all over world and show data for groups of de-identified participants. Data is updated periodically.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Open source software package as high performance computing imbalance aware machine learning tool for genome wide detection of pathogenic variants.

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• SciCrunch
• 7 years ago - submitted by Alessandro Petrini