Curator Dashboard

Code repository for all government funded software. Designed to support reuse and public access to custom developed Federal source code. It requires new custom developed source code developed specifically by or for Federal Government to be made available for sharing and re-use across all Federal agencies. Provides tools to help government and public collaborate on open source projects.

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• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

Software repository for DOE funded software tools. DOE software services platform and search tool for DOE-funded code – DOE CODE. Provides functionality for collaboration, archiving, and discovery of scientific and business software. DOE CODE replaces OSTI old software center, Energy Science and Technology Software Center (ESTSC).US Department of Energy new open source software services and search platform for sharing research software between national institutes.

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• SciCrunch
• 7 years ago - submitted by Anita Bandrowski

Web based data management system that allows users to share, annotate, organize and analyze large collections of datasets. Software tool for creating some metadata about software tools automatically. Open source data management for long tail data. Provides support for extensible metadata annotation and distributed analytics for automatic curation of uploaded data. Open source software that can be customized and deployed on your own cloud.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Open community of researchers, educators, and professionals with goal of improving way we develop, share, use, and re-use agent based and computational models for study of social and ecological systems. Develops and maintains CoMSES Model Library, digital repository that supports discovery and good practices for software citation, digital preservation, reproducibility, and reuse.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software toool as search engine for academic software. Used to get correct citation for diverse research products including, software, datasets, preprints, and traditional articles to help creators of such products get full credit for their work.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Public research university based in Sydney, Australia, in suburb of Macquarie Park. Founded in 1964 by New South Wales Government, it was third university to be established in metropolitan area of Sydney.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Software Java tool for quantitative analysis of behavior. Used to address any theoretical problem that requires complex sequence of actions to be scored by human observer. Runs on microcomputer providing Java Virtual Machine[TM] and has been tested on Windows[TM] and Macintosh[TM] systems. Legacy version (version 0.9) works on older systems (Macintosh OS-9 and Windows-98), while Version 1.0 works well on Macintosh OS-X and Windows XP systems. JWatcher Video works best on Windows XP systems and has reduced functionality running in Macintosh OS-X. JWatcher-Palm can be used to acquire data on Palm OS[TM] equipped device and analyze it on your main computer.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web based tool for annotating bioassay protocols using semantic web terms. Enables searching, sorting, clustering and analyzing of assays without needing to read through original text. Exploits Common Assay Template based on underlying vocabularies and semantic standards from BioAssay Ontology, Drug Target Ontology, Cell Line Ontology and others. Users can identify similar assays and examine similarity of assays between and within organizations.

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• RRID-Legacy
• 7 years ago - submitted by Edyta Vieth

Software Python package bundling popular tasks in computational molecular biology, from sequence analysis to structural bioinformatics. Comprehensive library for computational molecular biology. Package features sequence and structure data analysis and editing functionality, support for common sequence and structure file formats, visualization capabilities, interfaces to external software (MSA software, BLAST, DSSP). Operating system(s): Windows, OS X, Linux.

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• RRID-Legacy
• 7 years ago - by Anonymous

Integrated genomic and functional genomic database for Entamoeba and Acanthamoeba parasites. Contains genomes of three Entamoeba species and microarray expression data for E. histolytica. Integrates whole genome sequence and annotation and includes experimental data and environmental isolate sequences provided by community researchers.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool to obtain structural guidance in biocatalytic investigations. Program for molecular visualising, modelling, and dynamics. Initial stage YASARA View is for free while higher stages YASARA Model, YASARA Dynamics, YASARA Structure require license fee. Program for Windows, Linux, MacOS and Android. YASARA View is available for free and contains all functions to explore macromolecular structure interactively.

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• RRID-Legacy
• 7 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 23,2021.Web based structural analysis tool for any uploaded PDB file, producing Ramachandran plots, computing dihedral angles and extracting sequence from PDB. Used to visualize dihedral angles ψ against φ of amino acid residues in protein structure.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web server for molecular docking. Performs structure prediction of protein–protein and protein–small molecule complexes. Molecular docking algorithm based on shape complementarity principles.

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• RRID-Legacy
• 7 years ago - by Anonymous

DNA structure modelling server. Web server for generating custom 3D structural models of DNA with control over local and global conformation.

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• RRID-Legacy
• 7 years ago - by Anonymous

Screen based eye tracker that combines high-speed capabilities at 500 Hz.

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• RRID-Legacy
• 7 years ago - by Anonymous

Interactive scientific development environment package for Python. Used for editing, analysis, debugging, and profiling functionality of comprehensive development tool with data exploration, interactive execution, deep inspection, and visualization.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool for screening papers for systematic reviews. Web and mobile app to help to expedite initial screening of abstracts and titles using process of semi automation while incorporating high level of usability.

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• RRID-Legacy
• 7 years ago - by Anonymous

Consortium is investigating physical and functional organization of human islet tissue environment, cell-cell relationships within pancreatic tissue ecosystem, and contributions of non endocrine components (acinar, ductal, vascular, perivascular, neuronal, lymphatic, immune) to islet cell function and dysfunction. HPAC consists of research grants as well as the Human Pancreas Analysis Program (HPAP).

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Software tool as search engine for ranking genes from arbitrary text queries. Enables to enter arbitrary search terms, to receive ranked lists of genes relevant to search terms. Returned ranked gene lists contain genes that were previously published in association with search terms, as well as genes predicted to be associated with terms based on data integration from multiple sources. Search results are presented with interactive visualizations.

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• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Software tool to provide algorithms, functions, and apps for designing and testing computer vision, 3D vision, and video processing systems for MATLAB. You can perform object detection and tracking, as well as feature detection, extraction, and matching. For 3D vision, toolbox supports single, stereo, and fisheye camera calibration; stereo vision; 3D reconstruction; and lidar and 3D point cloud processing. Computer vision apps automate ground truth labeling and camera calibration workflows.

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• RRID-Legacy
• 7 years ago - by Anonymous