Curator Dashboard

Software tool to draw CGO cylinder representing rotation axis for given transformation. Useful for drawing axes of rotational symmetry in oligomeric assembly.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as fully automated protein structure homology modeling server, accessible via ExPASy web server, or from program DeepView Swiss Pdb-Viewer. Structural bioinformatics web-server dedicated to homology modeling of 3D protein structures. Used to make protein modelling accessible to all biochemists and molecular biologists.

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• RRID-Legacy
• 7 years ago - by Anonymous

Resource presents information about animal lectins involved in various sugar recognition processes.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software tool as advanced image-based 3D modeling solution aimed at creating professional quality 3D content from still images by Agisoft LLC.

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• RRID-Legacy
• 7 years ago - by Anonymous

Stand alone software that performs photogrammetric processing of digital images and generates 3D spatial data to be used in GIS applications, cultural heritage documentation, and visual effects production as well as for indirect measurements of objects of various scales. Successor of PhotoScan and is advanced image-based 3D modeling solution aimed at creating professional quality 3D content from still images.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software package and web server for protein structure and function prediction. Used for predicting 3D structures for protein sequences without close homologs in Protein Data Bank. Given input sequence, predicts its secondary and tertiary structures, contacts, solvent accessibility, disordered regions and binding sites. Assigns some confidence scores to indicate quality of predicted 3D model.

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• RRID-Legacy
• 7 years ago - by Anonymous

Open source software package for standard and precise positioning with global navigation satellite system. Consists of portable program library and several application programs utilizing library. Program Package for GNSS Positioning.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software R package for integrating and analyzing multiple single-cell datasets. It relies on integrative non-negative matrix factorization to identify shared and dataset-specific factors. Used for analysis of multiple scRNA-seq data sets.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software R package as hierarchical, iterative clustering for analysis of transcriptomics data.Used for single cell RNA-seq analysis for transcriptomic type characterization from Allen Institute.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool to detect doublets in single-cell RNA-seq data. Software algorithm to remove doublets. Python code for identifying doublets in single-cell RNA-seq data. Framework for predicting impact of multiplets in given analysis and identifying problematic multiplets.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool as module for working with snap files in Python. Snap files are designed for storing single nucleus ATAC-seq datasets.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Benchtop fluorometer designed to accurately measure DNA, RNA, and protein quantity. Measures RNA integrity and quality. Touch screen to select and run assays with results displayed in few seconds.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Liquid handling instrument designed to optimize dependability and walk-away time. Biomek i7 Hybrid with enclosure has up to 45 deck positions and includes both Multichannel and Span-8 pipette heads in enclosed work space.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Semi automated pipetting system by Mettler Toledo. Instrument for semi-automated 96/384-well plate pipetting. Semi-Automated 96/384-Well Pipetting System where pipetting options range from 0.5 uL to 1000 uL.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Swinging bucket benchtop centrifuge. Eppendorf 5920 R refrigerated centrifuge.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software Python pipeline for linear and circular RNAs of known fusions exploration. Pipeline for exploring linear transcripts and circRNAs of known fusions based on RNA-Seq data. Known fusion genes are from multiple databases like COSMIC, ChimerDB, TicDB, FARE-CAFE and FusionCancer or user-added gene-pairs.

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• SciCrunch
• 7 years ago - submitted by HaiYun Wang

Software tool to calculate various physicochemical parameters for given protein stored in Swiss-Prot or TrEMBL or for user entered protein sequence. Protein can either be pecified as Swiss-Prot/TrEMBL accession number or ID, or in form of raw sequence. Computed parameters include molecular weight, theoretical pI, amino acid composition, atomic composition, extinction coefficient, estimated half-life, instability index, aliphatic index and grand average of hydropathicity.

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• RRID-Legacy
• 7 years ago - by Anonymous

Database of genes related to Repeat Expansion Diseases, as comprehensive manually curated database that covers all reported repeat expansion diseases included in PubMed and OMIM. Detailed information about each repeat and its related genes/diseases can be found in database, links to OMIM, NCBI and Ensembl are also provided. Provides list of predicted genes containing unstable tandem repeats that may cause diseases via abnormal repeat expansion by support vector machine and random forest.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software suite for population epigenetics integrated into Galaxy. Galaxy Docker repository for population epigenetics data analysis.

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• SciCrunch
• 7 years ago - submitted by Krzysztof Poterlowicz

Software tool for statistics and data visualization by Red Rock Software, Inc. Provides unparalleled chart selection, data analysis and graph customization capabilities.

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• RRID-Legacy
• 7 years ago - by Anonymous