Curator Dashboard

Web tool for protein-protein docking. Server provides removal of unstructured protein regions, application of attraction or repulsion, accounting for pairwise distance restraints, construction of homo-multimers, consideration of small-angle X-ray scattering data, and location of heparin-binding sites. Six different energy functions can be used, depending on protein type.This protocol describes use of various options, construction of auxiliary restraints files, selection of energy parameters, and analysis of results.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for partition stLFR reads based on trio binning using prenatally unique markers. Haplotype resolved assembly for synthetic long reads using Trio-Binning strategy.

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• RRID-Legacy
• 6 years ago - submitted by Mengyang Xu

Software R package for species distribution modeling, calibration and evaluation, ensemble of models, ensemble forecasting and visualization.

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• RRID-Legacy
• 6 years ago - by Anonymous

Rsearch institute and university in Lausanne, Switzerland, that specializes in natural sciences and engineering. It is one of the two Swiss Federal Institutes of Technology, and it has three main missions: education, research and technology transfer at the highest international level.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software tool as Nanopore sequence read simulator based on statistical characterization. Oxford Nanopore Technology sequence simulator written in Python and R. Benefits development of scalable next generation sequencing technologies for long nanopore reads, including genome assembly, mutation detection, and metagenomic analysis software.

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• RRID-Legacy
• 6 years ago - by Anonymous

Comprehensive and manually annotated resource for mycobacterial genomes. Genomic and proteomic data repository for pathogenic mycobacteria. Provides manually curated annotations and tools to facilitate genomic and proteomic study of these organisms. Integrates genome details, protein information, drug and transcriptome data, mutant and operon annotation.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software package for data analysis by Shimadzu Oceania.

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• RRID-Legacy
• 6 years ago - by Anonymous

Floor model preparative ultracentrifuge by Beckman Coulter Inc. with max. speed 90,000 rpm. Offers simplified use, optimized control and security, and increases productivity. Rotors, labware, and services are available.

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• RRID-Legacy
• 6 years ago - submitted by Liliana Pineros Leyton

Software package as spatial graph based computing engine for ecological big data. Modular open source knowledge engine designed to import, organize, analyse and visualize big spatial ecological datasets using power of graph theory. Handles species occurrences and their taxonomic classification for performing ecological analysis on biodiversity and species distributions. Data are linked with relationships that are stored in graph database, while tabular and geospatial data are stored in relational database management system.

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• RRID-Legacy
• 6 years ago - submitted by Juan Escamilla Molgora

Discontinued software tool used to analyse images. Documented on March 30, 2020. Cheshire intended for clinical use for teleradiology, telecardiology, in hospital view stations and image review for referring physicians.

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• RRID-Legacy
• 6 years ago - by Anonymous

Open source project to harness scientific and public health potential of pathogen genome data. Provides continually updated view of publicly available data alongside powerful analytic and visualization tools for use by community. Used to aid epidemiological understanding and improve outbreak response. Open source SARS-CoV-2 genome data and analytic and visualization tools.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Free online archive and distribution server for complete but unpublished manuscripts in the medical, clinical, and related health sciences. Preprints are preliminary reports of work that have not been certified by peer review. They should not be relied on to guide clinical practice or health related behavior and should not be reported in news media as established information. Research articles, systematic reviews and meta analyses, clinical research design protocols and data articles may be posted.

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• dkNET
• 7 years ago - submitted by Jeffrey Grethe

Software environment that includes tools and integrations for professional Python and Web development. Integrated Development Environment by JetBrains. Used for development in Python and frameworks like DJango. Can be customized with themes and plugins.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web resource for immunoglobulins (IG), T cell receptors (TR) and major histocompatibility (MH) and related proteins of immune system (RPI). Comprises LIGM expertized data on immunoglobulins (IG), T cell receptors (TR) and major histocompatibility (MH) and related proteins of immune system.

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• RRID-Legacy
• 7 years ago - by Anonymous

Web server for structure validation in homology modeling. Used to validate of obtained crude models. Structure analysis and validation server.

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• RRID-Legacy
• 7 years ago - by Anonymous

Software R Package that provides parameter-free method for optimizing trade-off between resolution of clusters and their replicability across datasets. Dune method takes as input set of clustering results on dataset, and iteratively merges clusters within those clusterings in order to maximize their concordance. Iterative merging of clusters to improve mean ARI

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software package as dimension reduction technique that can be used for visualization similar to t-SNE, but also for general non-linear dimension reduction. Used for dimensionality reduction for visualizing single-cell data.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool to create tar archives, as well as various other kinds of manipulation. Used to extract files, to store additional files, or to update or list files which were already stored. Can direct its output to available devices, files, or other programs, can access remote devices or files.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software tool as non interactive command line text editor. Command line that works with streams of characters for searching, filtering and text processing. Used for extracting part of file using pattern matching or substituting multiple occurrences of string within file.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

Software Python package for data analysis providing labeled data structures similar to R data. Provides data structures designed to make working with relational or labeled data. Software as building block for doing practical, real world open source data analysis and manipulation tool.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski