Curator Dashboard

Initiative to mobilize talent and partnerships across United Kingdom to coordinate and connect national data science driven research efforts related to COVID-19 to address wider impact of COVID-19 pandemic.National Institute for Health Data Science for England, Wales, Scotland and Northern Ireland, is championing use of health data to respond to COVID-19.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

Interactive web based tool for creating line graphs for scientific publications. Users can view different summary statistics, examine lines for any individual in data, focus on time points or groups of interest, and view changes between any two time points and conditions.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web app for visualizing data together with their summaries. Visualizes data and statistics to enable comparison of experimental conditions. Written in R and uses packages including shiny, ggplot2, dplyr, tidyr, readr, magrittr, ggbeeswarm, readxl, DT. Github page of PlotsOfData can be used to trace changes between different versions.

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• RRID-Legacy
• 6 years ago - by Anonymous

Collection of ontology of provisional cells determined by experimental methods.

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• NIF
• 6 years ago - submitted by Maryann Martone

Web application for plotting and annotating continuous data. Open source web app for plotting and annotating time series data. Used to inspect data and generate publication quality visualizations. Available options for plotting include lineplot, small multiples and heatmap, summary statistics and inferential statistics.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web based interactive visual analysis system for exploration of single cell data published in Allen Cell Types Database and for number of single cell data resources of Brain Initiative Single Cell Network. Allows interactive exploration of hierarchies of cell types, visualization of transcriptome wide gene expression in combination with metadata of individual cells, performing differential analyses and statistics between manual selections of cells, or between pre-defined clusters throughout cellular hierarchy and more.

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• NIF
• 6 years ago - submitted by Maryann Martone

Web-based tool to create customized interactive graphics, including univariate scatterplots, box plots, and violin plots, for comparing values of continuous variable across different study groups, visualization of subgroups or clusters of non-independent data. Web visualization tool for creating dot plots, box plots and violin plots for small sample size data sets.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool for creating interactive graphics. Enables authors to create interactive graphics from data obtained with repeated independent experiments. Designed for laboratory studies with repeated experiments.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool for creating box plots with dot plots. Boxplot for grouped and clustered data in toxicology. Jittered boxplots for visualizing grouped and clustered data from toxicological studies together with individual raw values and indications of statistical significance.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for analysis of ultrasound data from vascular flow mediated dilation studies. Flow Mediated Dilation software endothelial function assessment by Quipu.

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• RRID-Legacy
• 6 years ago - by Anonymous

System for arterial assessment and diagnosis by Alam Medical. Device measuring pulse wave velocity and central pressure analysis in single acquisition.

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• RRID-Legacy
• 6 years ago - by Anonymous

System for measuring pulse wave velocity, pulse wave analysis by ATCOR. System for noninvasive central blood pressure waveform assessment. Provides measures of central arterial pressure waveform and pulse wave velocity as well as assessment of arterial stiffness via waveform analysis e.g. augmentation index, augmented pressure, and reflected wave magnitude.

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• RRID-Legacy
• 6 years ago - by Anonymous

System for non-invasive vascular function assessment by Itamar Medical Ltd.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web application for data analysis and visualizing effect sizes. Data analysis with estimation graphics.

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• RRID-Legacy
• 6 years ago - by Anonymous

Reference library processing for JavaScript. Reference library processing for NodeJS.

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• SciCrunch
• 6 years ago - submitted by Matt Carter

Collection of SARS-CoV-2 sequences currently available in GenBank genetic sequence database and Sequence Read Archive. Updated as additional sequences are released.

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• rapid-viraldb
• 6 years ago - submitted by Mia Jeffris

Software tool as cross platform, language agnostic binary package manager. Open source package management system and environment management system that runs on Windows, macOS and Linux. Can quickly install, run, and update packages and their dependencies. Package, dependency and environment management for any language—Python, R, Ruby, Lua, Scala, Java, JavaScript, C/ C++, FORTRAN, and more. Created for Python programs, but it can package and distribute software for any language. Conda can be combined with continuous integration systems such as Travis CI and AppVeyor to provide frequent, automated testing of your code. Conda package and environment manager is included in all versions of Anaconda and Miniconda.

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• SciCrunch
• 6 years ago - by Anonymous

Software distribution management for life sciences. Channel for Conda package manager specializing in bioinformatics software. Consists of repository of recipes hosted on GitHub, build system turning these recipes into conda packages, repository of packages containing bioinformatics packages ready to use with conda install.

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• SciCrunch
• 6 years ago - by Anonymous

Open source web application to create and share documents that contain live code, equations, visualizations and narrative text. Used for data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning.

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• SciCrunch
• 6 years ago - by Anonymous

Interactive web based tool for analyzing biomacromolecular channels, tunnels and pores. Enables two modes of calculation with one dedicated to analysis of channels and another for transmembrane pores. Can use PDB and mmCIF formats. Can analyze biomacromolecular structures stemming from NMR, X-ray and cryo-EM techniques. Interconnected with PDBe, CSA, ChannelsDB, OPM, UniProt to help setup and analysis of acquired results. Provides analytics for detection and structural characterization of channels and information about their physicochemical features.

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• RRID-Legacy
• 6 years ago - by Anonymous