Curator Dashboard

Web tool implementing positional gene enrichment analysis of gene sets for high resolution identification of over represented chromosomal regions.

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• RRID-Legacy
• 6 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 24, 2020. Software tool as automated Gene Ontology based multi species gene set generator for gene set enrichment analysis. Used to generate gene sets required for Gene Set Enrichment Analysis for almost any organism for which GO term association data exists. <br/>Gene set collections can be automatically created for wide variety of species.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R tool for genome wide annotation for Rat, primarily based on mapping using Entrez Gene identifiers.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software workflow management system for automated and distributed analysis of large scale experimental data. Implemented in Java and is thus platform independent.

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• SciCrunch
• 6 years ago - submitted by Caroline Friedel

Software tool as quality control and processing pipeline for High Throughput Sequencing data. Uses tab delimited fastq format that allows for streaming from application to application. Interoperable with other standard Linux tools., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID-Legacy
• 6 years ago - submitted by Mikael Leijon

Software package to align brain slice images in atlas free manner.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software image analysis platform for quantitative tissue analysis in digital pathology by Indica Labs. Used for high-throughput, quantitative tissue analysis in oncology, neuroscience, metabolism, toxicology.

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• SciCrunch
• 6 years ago - submitted by Sean Griffiths

Software tool for analysis of Alternative Splicing events and calculation of weighted transcripts per million values TPM on gene level. RNA-seq analysis method that quantifies AS events of any complexity without loss of accuracy. Used for accurate profiling AS to find misregulation present in human diseases.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as method that takes cluster results from single cell nuclei RNAseq experiments and generates lists of minimal markers needed to define each cell type cluster. Utilizes random forest of decision trees machine learning approach. Used to determine minimum set of marker genes whose combined expression identified cells of given type with maximum classification accuracy.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Collections of Addgene plasmids, open access articles, protocols, and other resource collections related to COVID-19 that may be of use to scientists. Ordering or depositing plasmids related to COVID-19 research.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

Web page created by American Diabetes Association. Contains resources and information about COVID-19 for diabetes professionals and patients. ADA also provides online forum, webinar series and podcast. Online forum to exchange questions, answers, and best practices with leading clinicians from diabetes community. All ADA members can contribute, and any interested health professional can read forum and responses.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

Curated list of open funding calls and other support for researchers, non profit organizations and commercial organizations, specifically for COVID-19 and coronavirus related research. Non profit and commercial funding opportunities relevant to COVID-19. Updated daily.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

Data collection related to COVID-19 held at EMBL-EBI , including sequences of outbreak isolates and records related to coronavirus biology, protein expression, protein sequence, protein structure, proteome and translatome data and literature.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

Bioinformation related to COVID-19. Site developed and maintained by China National Center for Bioinformation. Collection of sequences, genome variations, publication, clinical resource data.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

Software tool as full text search engine for COVID-19 Open Research Dataset. Used to explore dataset and identify potential research efforts.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

Initiative from scientific community to put all available resources including highly skilled scientists at service of fight against COVID-19.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

Serves as clearinghouse for monoclonal antibodies against SARS-CoV-2. Database will catalog contributed antibodies in searchable resource and provide interactive analysis tools for comparisons among them. Most potent antibodies will guide development of vaccines to stop current outbreak and protect against future pandemics.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

Web based platform on COVID-19 to maintain predicted diagnostic, drug and vaccine candidates and computational resources on novel coronavirus SARS-CoV-2 and its resulting disease COVID-19. Provides collected and organized information from literature and other resources from internet, links to appropriate literature . Integrated multi-omics repository dedicated to current genomic, proteomic, diagnostic and therapeutic knowledge about coronaviruses.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

EMBL-EBI portal to enable researchers to upload, access and analyse COVID-19 related reference data and specialist datasets submitted to EMBL-EBI and other major centers for biomedical data. Used to facilitate data sharing and analysis to accelerate coronavirus research. The aim of the COVID-19 Data Portal is to facilitate data sharing and analysis, and to accelerate coronavirus research. EMBL-EBI and partners have set up the COVID-19 Data Portal, which will bring together relevant datasets submitted to EMBL-EBI and other major centres for biomedical data. The aim is to facilitate data sharing and analysis, and to accelerate coronavirus research. The COVID-19 Data Portal will enable researchers to upload, access and analyse COVID-19 related reference data and specialist datasets. The COVID-19 Data Portal will be the primary entry point into the functions of a wider project, the European COVID-19 Data Platform.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe

Collection of scholarly articles about COVID-19 and coronavirus family of viruses for use by global research community. Dataset is updated on weekly basis.

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• rapid-viraldb
• 6 years ago - submitted by Jeffrey Grethe