Curator Dashboard

Automated capillary gel electrophoresis genetic analyzer that sequences up to 96 DNA templates per run and is used for PCR sequencing and short tandem repeat genotyping.

• Resource
• SciCrunch
• 6 years ago - submitted by Leah Booher

Benchtop capillary genetic analyzer multicolor fluorescence based DNA analysis system with 16 capillaries. It can process 96 or 384 well plates.

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• SciCrunch
• 6 years ago - submitted by Leah Booher

Webserver for identifying targets for genetically modified crop breeding pipelines. Used to find proteins that have no annotation or function assigned and could be related to molecular mechanisms regarding abiotic stresses in plants. System aggregates orthology, coexpression networks and genomic data to filter genomes of plants downloaded from Phytozome and NCBI and select candidate proteins in that regard.

• Resource
• SciCrunch
• 6 years ago - submitted by Mauricio Mudadu

Software tool as framework to store, search and visualize biological data. Django instance provides data management, visualization, and searching functionalities to Chado databases. Resulting object-relational framework enables users, not only to set up local instance containing data regarding their organisms of interest, but also to develop all sorts of tools by accessing open source code.

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• SciCrunch
• 6 years ago - submitted by Mauricio Mudadu

Software package implements series of highly efficient tools to calculate functional properties of networks based on guilt by association methods. Ultra fast functional analysis of gene networks.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

A platinum/iridium electrode use for stimulating tissue samples. Manufactured by FHC Neural microTargeting Worldwide.

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• RRID-Legacy
• 6 years ago - submitted by Benjamin Owen

Collection of tools to provide algorithms, databases and software for interpreting and archiving data in systematic framework ranging from analysis of expression regulation from deep sequencing data, annotation of miRNA regulatory elements and targets to interpretation of role of ncRNAs in various diseases and pathways. Includes target prediction algorithms microT v4 and microT-CDS, databases of experimentally verified miRNA targets on coding and non-coding RNAs like TarBase v7.0 and LncBase, and software capable of identifying potentially altered molecular pathways by expression of single or multiple miRNAs , mirPath. Provides Web Server (v5.0) to support series of workflows enabling users to perform miRNA analyses.

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• RRID-Legacy
• 6 years ago - by Anonymous

Utilities to compute Wasserstein distance between persistence diagrams. Project has been renamed to Hera.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool as composable cycle creator in python.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software tool to check Python source files for errors. Passive checker of Python programs Used to analyze programs and detect various errors. Works by parsing source file, not importing it, so it is safe to use on modules with side effects.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software brain connectivity toolbox for Python.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Python interface to graph visualization software Graphviz Dot.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software package to test and visualize gene overlaps. Given two gene lists, tests significance of their overlap in comparison with genomic background.

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• RRID-Legacy
• 6 years ago - submitted by Neil McKenna

Software tool to extend unittest to make testing easier. Python unit test framework. Note, Nose has been in maintenance mode for the past several years and will likely cease without a new person/team to take over maintainership. New projects should consider using Nose2, py.test, or just plain unittest/unittest2.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software Python library for symbolic mathematics. It aims to become full featured computer algebra system (CAS) while keeping code as simple as possible in order to be comprehensible and easily extensible.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Jupyter core package. Software package on which Jupyter projects rely.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Battery powered amplifier with high and low pass filtering for recording extracellular signals by World Precision Instruments.

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• RRID-Legacy
• 6 years ago - submitted by Benjamin Owen

Terminal based console frontend for Jupyter kernels. This code is based on single process IPython terminal.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Jupyter protocol implementation and client libraries. Part of Project Jupyter which exists to develop open-source software, open-standards, and services for interactive computing across dozens of programming languages. Jupyter-client contains reference implementation of Jupyter protocol and provides client and kernel management APIs for working with kernels.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Web multi omics knowledgebase based upon public, manually curated transcriptomic and cistromic datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Integrated omics knowledgebase for mammalian cellular signaling pathways. Web browser interface was designed to accommodate numerous routine data mining strategies. Datasets are biocurated versions of publically archived datasets and are formatted according to recommendations of the FORCE11 Joint Declaration on Data Citation Principles73, and are made available under Creative Commons CC 3.0 BY license. Original datasets are available.

• Resource
• dkNET
• 6 years ago - submitted by Ko-Wei Lin