Curator Dashboard

Software package for data analysis in molecular biology and evolution. Integrated software package for converting, manipulating, statistically and graphically describing, and analyzing molecular sequence data. Used for genomic and phylogenetic data analysis on Windows, Linux, and Macintosh computers.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Brainarray custom CDFs for processing raw Affymetrix data. Used to map probe to probesets. Oligonucleotide probes on GeneChips are reorganized based on latest genome and transcriptome information.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software as open source virtual screening tool. Calculation is based on various druglikeness rules like Lipinski's rule, MDDR-like rule, Veber rule, Ghose filter, BBB rule, CMC-50 like rule and Quantitative Estimate of Drug-likeness (QED). Uses Chemistry Development Kit (CDK), Java library for descriptor calculation. Used for fast calculation of drug like properties of molecule.

• Resource
• SciCrunch
• 6 years ago - by Anonymous

Broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile conversion, normalization of molecules, generation of tautomers, molecule fragmentation, calculation of various molecular properties needed in QSAR, molecular modelling and drug design, high quality molecule depiction, molecular database tools supporting substructure and similarity searches. Molinspiration tools are platform independent and may be run on any PC, Mac, UNIX or LINUX machine. Software is distributed in form of engines, which may be used as stand-alone computational engines, used to power web-based tools, or incorporated into larger in-house Java applications.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web app to generate possible distributions of data matching given mean, SD, sample size, and range. Used for recovering data from summary statistics. Implementation of SPRITE in R programming environment.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software package for Bayesian analysis of complex statistical models using Markov chain Monte Carlo methods.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Ruby Gem with bioinformatics tools for processing viral NGS data. Specifically for Primer-ID sequencing and HIV drug resistance analysis.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Web server for prediction of protective antigens, tumor antigens and subunit vaccines. Alignment free approach for antigen prediction, which is based on auto cross covariance transformation of protein sequences into uniform vectors of principal amino acid properties.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Web Application for distilling systemic implications of COVID-19 pandemic with Natural Language Processing.

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• SciCrunch
• 6 years ago - submitted by Nathan Anderson

Interactive web application that depicts daily disease trends at level of US counties using time series plots and maps.

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• SciCrunch
• 6 years ago - submitted by Nathan Anderson

Software R package for performing new user cohort studies in observational database in OMOP Common Data Model.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Advanced benchtop tandem quadrupole mass spectrometer which expands scope of ultimate sensitivity analysis. Fatures probe design which allows users much easier maintenance, optimization and improved reproducibility between operators. Method transfer onto Xevo TQ-XS is made simple by Xtended Dynamic Range detector which allows six orders of linear dynamic range. Wider compound coverage without changing ionization technique is delivered by the revolutionary UniSpray source option.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software automated screening tool that detects bar graphs of continuous data in preprints submitted to bioRxiv. Used for detection of bar graphs for continuous data in BioRxiv preprints.

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• RRID-Legacy
• 6 years ago - submitted by Tracey Weissgerber

Open source cross platform desktop geographic information system application that supports viewing, editing, and analysis of geospatial data. Functions as geographic information system software, allowing users to analyze and edit spatial information, in addition to composing and exporting graphical maps.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web server for prediction of toxicity of chemicals. Virtual lab for prediction of toxicities of small molecules. Used for prediction of multiple toxicological endpoints related with chemical structure.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web based algorithm for prediction and design of antiviral compounds. Integrated web server for prediction and design of antiviral compounds.

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• RRID-Legacy
• 6 years ago - by Anonymous

Database includes genomic codon-pair and dinucleotide statistics of all organisms with sequenced genome. Facilitates genetic variation analyses and recombinant gene design. Derived from all available GenBank and RefSeq data.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Database provides cell markers for various cell types in tissues of human and mouse. Manually curated resource of cell markers in human and mouse. Provides user-friendly interface for browsing, searching and downloading markers of diverse cell types of different tissues. Summarized marker prevalence in each cell type is graphically presented., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 18, 2020. Software package to create, visualize and analyze biological networks. Can include coding relations to distinguish between genes and their products. BisoGenet client is designed to work as Cytoscape plugin for querying server along with graph topology analysis and visualization options for easing interpretation process.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software tool based on hashing algorithm and approach to genomic reference indices from Noblis. Used to indexing genomic references. Aligns reads on reference genomes at random positions where k-mer indexes are matched with reference genomes.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson