Curator Dashboard

Software tool which allows to control Doric hardware and acquire all required data simultaneously. Incorporates different modules for each devices connected.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web tool to classify citation statements from scientific articles using deep learning. Used for discovering and evaluating scientific articles via Smart Citations.

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• RRID-Legacy
• 6 years ago - submitted by Peter Grabitz

Collection of human pancreas data and images. Platform to share data from human pancreas samples. Houses reference datasets from human pancreas samples, achieved through generosity of organ donors and their families.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Collection of data from all pancreatic islet isolations.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Large scale electron microscopy datasets. Large scale electron microscopy database for Human Type 1 Diabetes.

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• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Software package to detect footprints of positive selection for functionally adaptive point mutations in microbial genomes.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Web tool to predict linear antigenic epitopes. Predicts antigenic epitope with latest sequence input from IEDB database. Method to predict antigenic epitopes using support vector machine to integrate Tri-Peptide similarity and propensity.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software tool for upgraded implementation of probabilistic scoring of affinity purification mass spectrometry data. Used for filtering high confidence interaction data from affinity purification mass spectrometry experiments. Used for assigning confidence scores to protein-protein interactions based on quantitative proteomics data in AP-MS experiments.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Web server for blind peptide protein docking based on hierarchical algorithm. Blind peptide-protein docking by fast modeling of peptide conformations and global sampling of binding orientations.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software R package for visualization and annotation of phylogenetic trees with their covariates and other tree like structures with their annotation data. Can import evolutionary data from different tree file formats and analysis programs as well as other associated data from experiments so that various sources and types of data can be displayed on tree for comparison and further analyses.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software program for spatial analysis for non geographic information systems specialists. Includes functionality ranging from simple mapping to exploratory data analysis, visualization of global and local spatial autocorrelation, and spatial regression.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Web server for protein structure prediction and refinement. Used to predict protein structure from sequence by template based modeling. Used for refinement after providing starting model structure and locations of loops or termini to be refined.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software tool as model building program for cryo-electron microscopy. Processes cryoEM maps through secondary structure stage and Cα stageA. Template matching based automatic model building program for high resolution Cryo-Electron Microscopy maps.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software package for sequence alignment. Pairwise aligner for aligning DNA sequences. Designed to handle sequences size of human chromosomes and from different species. Useful for sequences produced by NGS sequencing technologies.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Desktop application that provides interactive visualization functionality to analyze data from different 10x Genomics solutions. Used to interrogate different views of 10x data to gain insights into underlying biology.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software technical plotting, curve fitting and data analysis application. Provides graphical user interface for data exploration as well as various statistical analysis tools, peak fitting options, raster or vector formats of publishable plots. Graphing software for medical writers.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software workflow and set of tools for scholarly publishing to enable collaborative authoring of scholarly manuscripts. Used to write manuscript in markdown, track it with git, automatically convert it to .html, .pdf, or .docx, and deploy it to destination of choice.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Web tool for maximizing usable data in alignment. Maximizes number of characters that are present in gap free columns alignment area by selecting optimal subset of sequences. Removes sequences with many gaps in post process of alignments in order to improve alignment area.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software tool as Next Generation Sequencing assembler. Optimized for metagenomes, but also works well on generic single genome assembly (small or mammalian size) and single cell assembly. Can assemble genome sequences from metagenomic datasets of hundreds of Giga base-pairs in time and memory efficient manner on single server.

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• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson

Software tool as pairwise alignment for nucleotide sequences. Alignment program to map DNA or long mRNA sequences against large reference database. Versatile pairwise aligner for genomic and spliced nucleotide sequences.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Nathan Anderson