Curator Dashboard

A database of tissue specific nuclear receptor transcriptomes based on annotated published genome wide transcriptional profiling experiments in the field of nuclear receptor signaling. Queries can include single and multiple genes, Gene Ontology terms, disease terms, and uploaded custom gene lists.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

Web phylogeny server based on the maximum-likelihood principle.

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• RRID-Legacy
• 10 years ago - by Anonymous

Core facility provides a model for collaborative approaches to use specialized resources and expertise in an integrated process. Core builds on the expertise and resources provided by the Bioinformatics Cores of the five northeastern states that form NECC. The Skate Genome Annotation Workshops and Jamborees offer training and opportunities for faculty and students to work with and annotate genome sequences. Workshops include lectures, tutorials and exercises annotating the genome of the little skate, Leucoraja erinacea.

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• SciCrunch
• 15 years ago - by Anonymous

An institution located in Bangalore focused on higher education. The university has established Gandhi Bhavan, Dr. B.R. Ambedkar Study and Research Centre, and Centre for Study of Social Exclusion and Inclusive policy as well as schools of biological sciences, social sciences, and business studies.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

Facility, located at General Campus of Ottawa Hospital, was established in 1998 and now includes three flow cytometers, two of which have sorting capabilities. Offers sorting precision required for isolation of rare cell populations with high purity and yield, up to 20 000 events per second. Allows simultaneous analysis of variety of light scatter and fluorescence parameters on single cells.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A portal for hormone-related health information for the public, physicians, allied health professionals and the media. It serves as a resource for the public by promoting the prevention, treatment and cure of hormone-related conditions through outreach and education. It provides free educational materials, public forums, physician referral service, and media education campaigns. It offers a library of educational materials and programs covering a wide range of endocrine topics, including adrenal disorders, breast cancer, diabetes, osteoporosis, stress, thyroid disease and cancer.

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• SciCrunch
• 15 years ago - by Anonymous

A software application which allows for interactive viewing and publishing of a wide range of 2D and 3D image data formats. Users can use the tool to build custom views of image data that can be saved, integrated with peer-reviewed articles, and shared with readers through the Optical Society's journals. ISP supports DICOM, TIFF, and JPEG image formats.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

Supports next generation sequencing technologies and provides several next generation sequencing instruments. Several high-throughput technologies have been implemented to assess differential expression, inter-individual genetic variation, microRNA discovery, genome sequencing, targeted resequencing, epigenetic profiling and identification of binding sites of DNA or RNA-associated proteins.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

An ontology written in OWL 2 DL to enable the metadata properties of the DataCite Metadata Kernel Specification version 2.2 (http://test.datacite.org/schema/meta/kernel-2.2/index.html) to be described in RDF. This version of the DataCite Ontology has been completely revised and significantly expanded to permit accurate mapping of this new version of the DataCite Metadata Kernel Specification to RDF.

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• SciCrunch
• 15 years ago - by Anonymous

A portal that connects users to reserch expertise and resources within Florida's universities. Users can search for experts (principal investigators), funded research projects, centers and institutes, technology licensing opportunities, speakers, and instructional programs.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

Software tool that provides scalable way of keeping track of data and learned annotations. Initially built for Scanpy. Used as generic class for handling annotated data matrices. Stores data matrix with annotations of observations (samples, cells) and variables (features, genes), and unstructured annotations.

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• RRID-Legacy
• 7 years ago - submitted by Anita Bandrowski

AEO represents the Adverse Event Ontology, a community-driven ontology developed to standardize and integrate data on biomedical adverse events (e.g., vaccine adverse events) and support computer-assisted reasoning. The AEO also can be found in BioPortal, http://bioportal.bioontology.org/ontologies/45534?p=terms

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• SciCrunch
• 16 years ago - by Anonymous

A peer review management system which encourages timely and high quality peer review by using a credit system. Reviewers complete reviews using a general webform on academickarma.org, and if that review is submited to an editor within ten days, the reviewer is awarded a certain amount of points (karma credits). The author and editor both receive the review. Editors can use Academic Karma to identify specialized reviewers for future reference. A reviewer's personal profile, which includes the amount of karma credits they've received, is connected to their ORCID account and publication record for an overview of the reviewer's work.

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• SciCrunch
• 12 years ago - submitted by Kristen Jensen

Software library and database to manage nucleotide sequencing read data. It stores the source Pacbio read information in such a way that it can re-create the original input data, thus permitting a user to remove the (effectively redundant) source files and avoid duplicating data.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Repository of knockout mice that have been extensively characterized. For each mouse line, the contractors will provide not only the mouse line itself, but also detailed, objective data on the impact of the specific gene deletion on the mouse''s phenotype, which includes appearance, health, fitness, behavior, ability to reproduce, and radiological and microscopic data. Such comprehensive information on such a large group of mice has never been available to public sector researchers, and is expected to greatly accelerate efforts to explore gene functions in health and disease. This resource will give researchers unprecedented access to two private collections of knockout mice, providing valuable models for the study of human disease and laying the groundwork for a public, genome-wide library of knockout mice. The contracts also provide for the opportunity for NIH to obtain up to 1500 additional mouse lines and phenotypic data over the next three years, pending available funds. The new contracts provide NIH with irrevocable, perpetual, worldwide, royalty-free licenses to use and distribute to academic and non-profit researchers these lines of knockout mice. The mouse lines, which will be stored in the form of frozen embryos, frozen sperm and frozen embryonic stem (ES) cells, will be delivered to NIH-funded mouse repositories that supply mice to universities, medical schools and research labs all over the world. When researchers express interest in obtaining a certain knockout mouse line, the repositories will send them live mice, frozen embryos, sperm, and/or ES cells, so they can study the mice in their own labs. All data on the mice will be made available to researchers worldwide without restriction in publicly available databases on the Web. This resource will be available for a nominal fee which will be used to cover the cost of handling, shipping and replenishing the stock. Under the license agreements with Deltagen and Lexicon, researchers who receive the knockout mice lines through NIH are free to publish any results from research involving the line and also to seek patent or other intellectual property protection for any of the inventions or discoveries resulting from such research. List of Available Knockout Mice: http://www.informatics.jax.org/external/ko/

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• SciCrunch
• 17 years ago - by Anonymous

A MATLAB-based toolbox for analysis of EEG, MEG, and ECoG data. APERTURE allows flexible multivariate analysis of ERPs and oscillatory activity and supports mass-univariate analysis with advanced statistical tests. Computations are accelerated using parallel computing supported through the MATLAB distributed computing toolbox. Examination of large, high-dimensional datasets is made simple through data visualization tools, including advanced plotting routines and generation of PDF reports with many figures.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Software for DNA and amino acid editing, database management, plasmid maps, It can also be used for restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and more.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

A simple Java graphical user interface for running the program ISIM. ISIM is a package that simulates the thermodynamic ensemble of ions around a macromolecule using a grand canonical Monte Carlo scheme and simple hard sphere ion models. It is meant to provide an alternative mechanism to mean field approaches to allow the calculation of ion distributions around a highly charged molecule using a simple model that takes into account ion-ion correlations and steric interactions. The original source was created in the McCammon group at UCSD but is no longer available. The version of ISIM used is available in the ISIM project on simtk.org.

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• SciCrunch
• 17 years ago - by Anonymous

A DICOM image converter based on the ITK IO mechanism for reading and writing images. The formats currently supported by the converter are DICOM to: Analyze (*.hdr); MetaImage (*.mhd); Nrrd (*.nhdr, *.nrrd).

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Supports Dartmouth Cancer Center investigators in design, performance, data analysis, and interpretation of pharmacology objectives in preclinical, clinical and epidemiological studies.

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• SciCrunch
• 13 years ago - by Anonymous