Curator Dashboard

Bruker micrOTOF-Q II is benchtop Q-Tof mass spectrometer, applied to applications such as small molecule accurate mass determination, intact protein analysis including antibodies, peptide mapping, and other custom projects. This system is operated with Agilent 1260 UPLC and includes inline diode array detector and ESI source.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Microflex LRF mass spectrometer is specialized for protein, peptide, and polymer analysis. This MALDI-TOF instrument can be operated in linear mode for high mass accuracy characterization, or in reflector mode to achieve enhanced resolution.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Agilent GC/MS is single quadrupole instrument with electron ionization. GC/MS runs under ChemStation open access software, and trained open access users select from menu of standard methods to analyze their samples.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

LTQ-Orbitrap Elite mass spectrometer with Waters nanoAcquity system. Used for proteomic applications.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Web platform for downstream analysis and visualization of proteomics data. Server that facilitates integrated annotation, analysis and visualization of quantitative proteomics data, with emphasis on PTM networks and integration with LINCS library of chemical and genetic perturbation signatures in order to provide further mechanistic and functional insights. Primary input for server consists of set of peptides or proteins, optionally with PTM sites, and their corresponding abundance values.

• Resource
• dkNET
• 6 years ago - submitted by Ko-Wei Lin

Web tool for exploring variants in islet expression quantitative trait loci. Data is result of collaboration between Michigan University Parker lab, Department of Biostatistics and Center for Statistical Genetics at University of Michigan, National Human Genome Research Institute, Jackson Laboratory for Genomic Medicine, Department of Genetics at University of North Carolina, European Bioinformatics Institute, Department of Preventive Medicine at University of Southern California, and Department of Physiology and Biophysics at University of Southern California.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Atlas of gene regulatory elements in adult mouse cerebrum. Atlas of CIS elements, providing information on accessible chromatin in individual cells from regions of adult mouse isocortex, olfactory bulb, hippocampus and cerebral nuclei. Uses resulting data to define candidate cis-regulatory DNA elements in distinct cell groups. Many are linked to putative target genes expressed in diverse cerebral cell types and uncover transcriptional regulators involved in broad spectrum of molecular and cellular pathways in different neuronal and glial cell populations. Used for analysis of gene regulatory programs of mammalian brain and interpretation of non-coding risk variants associated with various neurological disease and traits in humans.

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• dkNET
• 6 years ago - submitted by Maryann Martone

Population based collection of white matter atlases represented in both volumetric and surface coordinates in standard space. These atlases include white matter fascicles derived from different tractography techniques including Automated Fiber-tract Quantification, Automated Fiber-tract Quantification clipped, Recobundles, Tracula, TractSeg, and Xtract.

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• NIF
• 6 years ago - by Anonymous

Community portal to crowd source viral data collection and viral resources.

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• SciCrunch
• 6 years ago - submitted by Jeffrey Grethe

Platform developed and operated by Stanford Medicine Research IT team for working with clinical data for research purposes. Permits collection and aggregation of all clinical data generated at Stanford for care purposes, and articulates formal approval process each research project must follow in order to obtain and work with this data for research purpose. Home of stride/web tools for Cohort Discovery and Chart Review.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software analysis toolkit for single cell RNA-seq. Used for single cell RNA-Seq experiments. Unsupervised algorithm that increases temporal resolution of transcriptome dynamics using single-cell RNA-Seq data collected at multiple time points.

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• RRID-Legacy
• 6 years ago - by Anonymous

Database contains manually curated natural carbohydrate structures, taxonomy, bibliography, NMR data. Bacterial and Plant and Fungal databases were merged to improve quality of content-dependent services, such as taxon clustering or NMR simulation. These separate databases will be supported in parallel until 2020.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software R package for structural variant analysis. Contains helper functions for dealing with structural variants in VCF format. Contains functions for parsing VCFs from number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool for protein identification and relative protein expression analysis. Used in protein research to identify proteins and search large numbers of post translational modifications. Compatible with all proteomics MS/MS systems.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Provides services for USED lab instrument repairs.Recertified laboratory equipment commercially available. Comes fully re-certified to manufacturers standards with 90 day warranty.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Provides users with access to Panalytical XPert3 MRD and Panalytical Empyrean XRD platforms to perform variety of X-ray diffraction experiments including phase identification, phase quantification, crystallite size and microstrain determination, pole figures, residual stress, high-temperature in situ measurements. These instruments are available for both assisted and unassisted use with prior approval.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Provides fermentation services. Produces range of bulk biologics including antimicrobials, cosmetic substrates, flavors/fragrances, biopesticides/bioherbicides and plasmid derived proteins, enzymes, growth factors and diagnostics. Exceptions for pathogenic or opportunistic organisms and mammalian and insect cell lines. Includes Material Preparation Laboratory,Fermentation In-Process/Computer Control,Product Recovery and Analytical Services.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Provides services which include Sanger and next-generation DNA sequencing,DNA fragment analysis,qualitative and quantitative analysis of DNA, protein, and RNA samples, quantitative PCR, microarray RNA labeling, hybridization, and scanning robotics,bioinformatics.Individual and small group training and consultation services are offered for sequence analysis, real-time PCR, next-generation sequencing and microarray analysis.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Provides instruments for materials and nanomaterials research and full service TEM and cryoTEM sample preparation and imaging. Conducts CLEM and cryoCLEM workflows utilizing cryoFluorescence, cryoSEM and cryoFIB with focus on bio samples.Provides equipment and expertise to work with nanomaterials for characterization and imaging purpose. Core imaging capabilities include high performance field emission transmission electron microscope equipped with STEM, EELS, EDS and cryo-imaging, high performance field emission scanning electron microscope and focused ion beam equipped with STEM and cryo-imaging, cryo-fluorescent confocal microscope for CLEM workflows, and atomic force microscope equipped with liquid cell. Instrumentation for material characterization includes high throughputdynamic light scattering, nanoparticle sizing and counting, and rheometry.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Microscopy facility. Contains microscopes including confocal, super-resolution, multi-photon, light sheet, live cell imaging, high-content screening, slide scanning, laser dissection and macroscopy stations. Features wet lab space, eukaryotic and prokaryotic incubation, and access to nearby animal care facilities for wide range of species.Services include Cell Imaging,Confocal Microscopy,Consultations,Data Analysis,Data Processing And Interpretation,High Content Screening,Laser Capture Microdissection,Microscopy,Multiphoton Microscopy,Optical Imaging,Slide Scanning,Whole Slide Imaging.

• Resource
• SciCrunch
• 6 years ago - submitted by Edyta Vieth