Curator Dashboard

Software to generate differential expression analysis and visualization for easy interpretation. Takes normalized and summarized data from Affymetrix Expression Console software to next level, providing differential expression analysis and visualization for easy interpretation.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software tool for RNA-seq analysis of non model species using cloud computing. Provides user friendly front end to operate Amazon hardware resources and to control workflows of bioinformatic analysis of de novo RNA-seq, reference-based RNA-seq and functional annotation specifically oriented to plant species.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Unai López de Heredia

System for processing Affymetrix microarrays. Microarray analysis system. Includes array strip and hybridization assembly, Fluidics station, Imaging station.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Confocal microscope covers broad range of requirements in confocal and multiphoton imaging with array of scan speeds at highest resolution., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Inverted microscope for biomedical research. Offers Differential Interference Contrast for relief imaging of specimens with varying indices of refraction. Used for fluorescence, live cell, time-lapse imaging, high-speed multi-fluorescence optical sectioning, and micromanipulation. Features automated contrast and illumination manager, motorized Z focus, parfocality function, automatic brightness and diaphragm adjustment, and many other automated functions that provide convenience and reproducible results. Archived Product. Replaced by DMi8 S.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

System designed for users who need easy-to-use real-time PCR system. QuantStudio 3 Real Time PCR System supports 96-well (0.2ml or 0.1ml) or 384-well (QS5 only) consumables. Can detect extremely small changes in gene expression, as little as 1.5-fold. Its dynamic range of up to 10 logs allows for tracking wide range of expression changes across various sample types and conditions. When connected to Thermo Fisher Cloud, QuantStudio 3 system provides access to your data wherever and whenever you want.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Database of genome wide functional coupling networks. Provides tools to explore predicted networks and to retrieve detailed information about data underlying each prediction. Web service for functional coupling search.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Software comprehensive design tool for CRISPR mediated gene editing, repression and activation. Fast and comprehensive guide RNA design tool for genome editing, repression and activation. Used for automated genome wide sgRNA design.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Group of anatomical experts tasked with enhancing structured vocabularies around nerve to organ connections. Responsible for integrity of anatomical knowledge in SPARC. Provides relevant guidance and expertise about defining and naming anatomical terms, maintaining ontologies and anatomical knowledge, compliling and curating computable knowledge about multiscale route pathways. Provides access to data generated by SAWG which includes links to documentation about vocabulary services, term request and connectivity. Page will be continuously updated.

• Organization
• SciCrunch
• 6 years ago - submitted by Anita Bandrowski

Software tool to describe spatial patterns in degrees of inhomogeneity and to incorporate intensity based correction to analyze images with wide range of resolutions. Can be used to assess protein and lipid patterns, quantifying distribution changes and spatial reorganization at cell surface.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Web tool for analyzing regulatory potential of noncoding sequences. rVISTA web server is interconnected with TRANSFAC database, allowing users to either search for matrices present in TRANSFAC library collection or search for user defined consensus sequences. rVISTA 2.0 web server is used for high throughput discovery of cis-regulatory elements. Can process alignments generated by zPicture and blastz alignment programs or use pre-computed pairwise alignments of several vertebrate genomes available from ECR Browser and GALA database. Evolutionary analysis of transcription factor binding sites.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Integrated software and instrument system for performance in cell-based screening and analysis.

• Resource
• RRID-Legacy
• 6 years ago - by Anonymous

Micromass (now Waters) Quattro Premier triple quadrupole operates with Agilent 1100 HPLC and specializes in quantitative work and selective of targeted analytes including metabolites and other small molecules, and peptides from complex matrices such as serum, tissue, cell culture, and other biological sources.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Triple quad mass spectrometer for quantitative work and selective assays of targeted analytes. Can analyze metabolites, peptides from matrices such as serum, tissue, cell culture, and other biological sources.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

HFX offers scanning rate to improve proteomic depth for discovery applications. Integrates well with targeted applications such as parallel reaction monitoring. Mass Spectrometer to identify and quantify proteins, peptides, lipids, glycans and small molecules accurately.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

System includes Thermo Orbitrap Fusion Tribrid mass spectrometer and Waters M-Class Acquity nanoUPLC. This platform features sequential acquisition capabilities and multiple fragmentation types, enabling complex, in depth proteomic experiments.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

LTQ XL ion trap mass spectrometer with Agilent 1100 HPLC system for metabolite identification, stability testing, degradation products, and high abundance quantitation.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Thermo Exactive benchtop Orbitrap operates with Waters Acquity UPLC and generates high resolution, high mass accuracy full MS data. Available to advanced open access users for reversed phase and HILIC LC/MS applications.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Shimadzu 8030 triple quadrupole mass spectrometer used for targeted quantitation applications. Listed by Stanford University Mass Spectrometry Vincent Coates Foundation Instruments.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Scion GC triple quad is applied to targeted trace level analysis of metabolites and other small molecules. Electron ionization combines with MS/MS capability for outstanding selectivity. Samples are often derivatized for compatibility with GC/MS.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth