Curator Dashboard

Software tool set to assess quality of per read phasing information and help to reduce errors during this process.

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• SciCrunch
• 6 years ago - submitted by Sina Majidian

Software tool for automated acquisition of high resolution images from large areas.

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• RRID-Legacy
• 6 years ago - submitted by Allison Schaser

Web server for comprehensive analysis of tumor infiltrating immune cells. Web tool for systematical analysis of immune infiltrates across diverse cancer types. Allows users to input function specific parameters, with resulting figures dynamically displayed to access tumor immunological, clinical, and genomic features.

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• RRID-Legacy
• 6 years ago - by Anonymous

Advanced Microscopy Facility is microscopy service and shared instrumentation facility in University of Virginia biomedical research community. Pprovides expertise and instrument access for electron and light microscopy imaging technologies as well as image analysis tools and services for basic scientists and clinical researchers within University of Virginia and across Commonwealth.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Software molecular visualization application for Mac OS X operating system. Tool for chemists and molecular biologists used for handling small and large molecules, loading multiple molecules, moving and rotating them independently, or displaying molecular dynamics trajectory. Allows loading molecules using file formats: PDB, XYZ, MOL2, HIN, CAR, ALC, BIO.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R package to obtain estimated marginal means for linear, generalized linear, and mixed models. Compute contrasts or linear functions of EMMs, trends, and comparisons of slopes. Plots and other displays.

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• RRID-Legacy
• 6 years ago - submitted by Kate Kennedy

Web tool for sharing and re-using biomodels, simulations, and visualizations of simulations results. Supports variety of modeling frameworks including kinetic, constraint based, and logical modeling, model formats including BNGL, CellML, SBML, and simulation tools including COPASI, libRoadRunner/tellurium, NFSim, VCell.

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• SciCrunch
• 6 years ago - by Anonymous

Open source Python codebase that provides real-time interface between open-hardware devices for electrophysiological recordings like EEG, EMG, and ECG, and analog and digital devices like MIDI, OSC, and analog synthesizers. This allows one to use electrical brain/body activity to flexibly control devices in real-time.

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• RRID-Legacy
• 6 years ago - submitted by Robert Oostenveld

Software Python package for annotating and counting genomic features in genomes and metagenomes. Software tools to facilitate annotation and comparison of genomes and metagenomes.

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• RRID-Legacy
• 6 years ago - submitted by Christopher Thornton

Software tool as deep learning framework based on variational autoencoder to impute missing values in transcriptome and methylome data analysis.

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• RRID-Legacy
• 6 years ago - submitted by Lina Qiu

Web tool for conserved domains searching within protein or coding nucleotide sequence.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web accessible database for visualizing and mining global yeast genetic interaction network. Allows users to easily access, visualize, explore, and functionally annotate genetic interactions, or to extract and reorganize sub networks, using data driven network layouts in intuitive and interactive manner. Used for storing and visualizing genetic interactions in S. cerevisiae.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as graph based representation learning method for protein function prediction. Multi modal graph based representation learning model that can integrate heterogeneous information including multiple types of interaction networks including sequence similarity network and protein-protein interaction network, and protein features including amino acid sequence, sub cellular location and protein domains, to predict protein functions on Gene Ontology.

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• SciCrunch
• 6 years ago - submitted by Kunjie Fan

Software tool to processes big immunome data from raw sequences to quantitated clonotypes by MiLaboratory LLC. Universal software for analysis of T- and B-cell receptor repertoire high throughput sequencing data. Software for comprehensive adaptive immunity profiling.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool as microscopy image file format converter by MBF Bioscience. Converts common microscopy image files to JPEG2000 and OME-TIFF. Used to view, analyze, and share big image data from many sources.

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• RRID-Legacy
• 6 years ago - submitted by Maci Heal

Library with storage capacity of over million compounds possessing diversified structures. Coupled with this library will be advanced sample handling, information management and quality control systems. As important material and information resource, CNCL will work with both domestic and international stakeholders to promote sustained development of Chinese pharmaceutical industry.

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• RRID-Legacy
• 6 years ago - by Anonymous

Web server to indicate severity of anisotropy in data set. Degree of anisotropy is indicated by anisotropic delta B statistic.

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• RRID-Legacy
• 6 years ago - by Anonymous

Evidence based minimum set of items for reporting in systematic reviews and meta analyses. Focuses on reporting of reviews evaluating randomized trials, but can also be used as basis for reporting systematic reviews of other types of research, particularly evaluations of interventions.

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• SciCrunch
• 6 years ago - submitted by Anita Bandrowski

Standards for transparent trials reporting. Encompasses various initiatives developed by CONSORT Group to alleviate problems arising from inadequate reporting of randomized controlled trials. Main product of CONSORT is CONSORT Statement, which is evidence based, minimum set of recommendations for reporting randomized trials. CONSORT Statement is endorsed by medical journals and leading editorial organizations.

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• SciCrunch
• 6 years ago - submitted by Anita Bandrowski

Guidelines to improve reporting of research using animals by maximizing information published and minimizing unnecessary studies. Guidelines, originally published in PLOS Biology, were developed in consultation with scientific community as part of NC3Rs initiative to improve standard of reporting of research using animals. Can be applied to any area of bioscience research using laboratory animals.

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• SciCrunch
• 6 years ago - submitted by Anita Bandrowski