Curator Dashboard

Open source software package for analyzing taxonomic or metabolic profiles that promotes best practices in choosing appropriate statistical techniques and reporting results. Graphical software package that provides statistical hypothesis tests and exploratory plots for analyzing taxonomic and functional profiles. Supports tests for comparing pairs of samples or samples organized into two or more treatment groups.

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• RRID-Legacy
• 6 years ago - submitted by Fabrizio Giani

Open source software Python tool for detecting internal tandem duplication with variant allele frequency estimation.

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• RRID-Legacy
• 6 years ago - submitted by Tingyou Wang

Core provides services including high throughput next generation sequencing (NGS) to support whole genome, whole exome, RNA-Seq, single cell RNA-Seq, microbiome and global chromatin and methylation studies, biostatistical and bioinformatic support for NGS projects, access to DNA/RNA sequence analysis software, automated Sanger DNA sequencing, genotyping and RNA/DNA quality assessment, access to shared instrumentation such as plate readers, real time thermal cyclers, Agilent Bioanalyzers, fluorimeters, and spectrophotometers.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core offers investigators opportunity to address research questions that require use of gnotobiotic animals. Standard services provide germ free mice (e.g. BALB/c, C57BL/6), deriving new strains of mice into germ free state by caesarean section, tissue collection and/or fluid from mice that have not received treatment or manipulations, exporting germ free mice in sterile transporters to other institutions. Non-Standard Services include maintaining and breeding newly derived germ free mice, administration of specialized diets, administration of compounds as therapeutic or disease-inducing agents, tissue collection and/or fluid from mice that have received treatment or manipulations.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core offers instrumentation and expertise in all areas of bulk and single cell NGS genomics and transcriptomics, as well as training to access core shared instrumentations. Services include RNA Seq, CHIP Seq, ATAC Seq, Amplicon DNA Seq, 16S ribosomal gene sequencing, shot gun sequencing for small genomes and whole exome sequencing.10X Genomics resources include single cell CNV, VDJ, and 3 or 5 RNA seq as well as linked reads.Core provides real time and droplet digital PCR services most suitable for targeted gene expression, SNP genotyping and CNV discovery.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Collection of guidelines to encourage rigorous and reproducible research practices for cardiovascular physiology.

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• RRID-Legacy
• 6 years ago - submitted by Tracey Weissgerber

Software suite of tools for cataloguing and anonymising DICOM files, as used for Scottish Medical Imaging project. Software suite of microservices for loading, anonymising, linking and extracting large volumnes of dicom medical images to support medical research. Platform allows dicom tags extracted from clinical images to be loaded into MongoDB and relational database tables for purposes of generating anonymous linked research extracts including image anonymisation.

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• RRID-Legacy
• 6 years ago - submitted by James Sutherland

Software tool as analysis pipeline for ribosome profiling experiments, which exploits triplet periodicity of ribosomal footprints to call translated regions. Statistical approach that identifies translated regions on basis of characteristic three nucleotide periodicity of Ribo-seq data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software library and command line tool for generating realistic looking synthetic Electronic Health Records data for testing purposes.

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• RRID-Legacy
• 6 years ago - submitted by James Sutherland

Open source software tool to extract metadata from DICOM files for indexing and storage in SQL database.

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• RRID-Legacy
• 6 years ago - submitted by James Sutherland

Software tool as DNA compressor that uses neural network to do mixing of experts.

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• SciCrunch
• 6 years ago - by Anonymous

Axio Imager 2 resolves samples from tissue sections in pathology to brain specimens in neuroscience to multi dyed FISH specimens. Works with ZEN imaging software.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Cell chamber with coverslip holder designed for viewing live cell specimens on upright or inverted microscopes. Surgical stainless steel chamber is autoclavable so cells can be grown directly on coverslips within unit. O-ring seal is designed to prevent samples from being contaminated by oil or leakage of media from coverslips. Chamber accepts 25 mm round coverslips and mounts in standard 35 mm diameter stage holder.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Software tool for creating solid 3D CAD objects. Used for creating 3D models focusing on CAD aspects of 3D modeling of machine parts. Reads in script file that describes object and renders 3D model from this script file.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Patch clamp amplifiers to minimize signal to noise ratio.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Software tool for real time analysis and data visualization. Software system for experimental control and quantitative data analysis in microscopy and spectroscopy.Integration of data processing and acquisition allows real time analysis and visualization of experimental results.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Two photon microscope capable of imaging deep within living specimens when combined with Ti:Sapphire Laser. Provides 3D objective movement and rotation allowing specimen to remain stationary.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

High definition color microscope camera equipped with 5.9 megapixel CMOS image sensor which enables capture of high definition images of up to 2880 x 2048 pixels. Enables various observations such as brightfield, DIC, phase contrast and fluorescence.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Multiphoton confocal microscope with spectrally tunable detection. Equipped with 4Tune, tunable, non descanned detection unit.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Unit records waveform data, digital event and marker information and can simultaneously generate waveform and digital outputs in real time for multi tasking experimental control.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine