Curator Dashboard

Software Python package for analysis of trajectories in clinical datasets.

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• SciCrunch
• 6 years ago - submitted by Jonathan Bac

Software tool as Java based framework to store, share and publish research data. Free software infrastructure to FAIRly maintain and publish in-house stored research data. Used for version tracking, metadata management, information retrieval, journal and founding agency proven registration of persistent identifiers (DOI), embedded HTTP(S) server for public data access, access as network file system, and scalable storage backend.

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• RRID-Legacy
• 6 years ago - submitted by Daniel Arend

Stock center that provides amphibian organisms, frogs and newts, primarily to Japanese investigators. The center runs the National BioResource Project (NBRP) Clawed frogs / Newts, which is financially supported by the Ministry of Education, Culture, Sports, Science and Technology (MEXT), Japan, to distribute these resources. Contributes to maintenance of biologically important strains of frogs and study biological characteristics of amphibian focusing genetics, developmental regulation, speciation, phylogeny, phenotype expression, and environment-induced mutagenesis.

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• RRID-Legacy
• 6 years ago - submitted by Makoto Suzuki

Browser for general overview of expression profiles for RNA-seq data. Presents expression profiles of selected gene in chosen group of cell types, in either microarray or ULI RNA-seq data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Collection of data set including single cell transcriptomes from multiple cortical areas and hippocampal formation. Samples were collected from dissections of brain regions from  8 week old male and female mice, primarily from pan GABAergic, pan glutamatergic, and pan neuronal transgenic lines, with addition of more specific transgenic lines and some retrogradely labeled cells in VISp and ALM.

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• SciCrunch
• 6 years ago - submitted by Anita Bandrowski

Web based mass spectrometry ecosystem that aims to be open access knowledge base for community wide organization and sharing of raw, processed or identified tandem mass spectrometry data. Database of mass spectrometry datasets.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Web based database of proteins, RNA, lipids and metabolites that are identified in extracellular vesicles. Compendium for extracellular vesicles with continuous community annotation and with manually curated data from published literature.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R package for performing Mendelian randomization using genome wide association study summary data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Command line client to facilitate common operations.

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• dkNET
• 6 years ago - submitted by Yaroslav Halchenko

Software tool as open source network based parallel processing solution for performing behavioral control, high precision stimulus presentation, and high density neurophysiological measurements. Framework uses network based parallel processing to implement experimental control and synchronize devices.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software tool to generate whole connected 3D brain ventricular shape model and encode ventricular surface deformation information that is inaccessible by ventricle volume measure. Contains automated segmentation approach and surface based multivariate morphometry statistics.

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• NIF
• 6 years ago - by Anonymous

3D scaffold creation software designed for capturing anatomical features using image data.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

3D scaffold fitting software designed for making connection between 3D scaffold and data in dataset.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Open source cross platform modeling environment for reproducible science. Used to organise, edit, simulate and analyse models described in CellML format, using SED-ML and COMBINE archives.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Open platform that accepts data from peripheral nervous system data. It was previously the Blackfynn data platform. Pennsieve provides advanced functionality to organize files and complex metadata describing datasets and allows users to interact, search, and analyze these data through web application or programmatically using Python client. Provides end-to-end solution for publishing datasets through Pennsieve Discover, assigning DOIs and ensuring that published data becomes available to larger academic community in sustainable and FAIR manner.

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• RRID-Legacy
• 6 years ago - submitted by Gabrielle Pine

Software toolkit for visualizing multiscale anatomy schematics with phenotype related information. Used for visualisation of multiscale physiology circuitboards and to support clinical and scientific graphical user interfaces and dashboards for biomedical resource management and data analytics. Creates FAIR models of vascular and neural connectivity information for molecular, subcellular, cellular and tissue conduits across multiple scales. Provides interface between physiology knowledge and data relevant to physiology through intuitive graphical interface for managing semantic metadata and ontologies relevant to physiology. Brings together expertise in computer science, image processing, bioengineering and medicine to manage knowledge in physiology and pathology., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 6 years ago - submitted by Anita Bandrowski

Simulation platform that enables users to create, access, tune, and run models or computational algorithms through web based interface. Web interactive simulation platform that hosts SPARC computational models and solvers. Allows collaborative development and sharing, model coupling and cloud based execution, data visualization and analysis, and ensures sustainability of computational models developed within SPARC. Enables users to create predictive, multiscale, multi-physics models spanning from modulation sources acting on peripheral nervous system (PNS) to resulting modulation of organ functional response.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Software application intended to simplify dataset curation and submission process for SPARC investigators by providing one stop tool to accomplish all required steps. Desktop software to facilitate data organization and submission process for Stimulating Peripheral Activity to Relieve Conditions (SPARC) investigators and thus promote FAIR Data Principles. Git repository tool for SODA data deposition for SPARC researchers.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Project aim is to identify and validate novel targets in auto immune and inflammatory diseases. Used to create and profile target directed chemical and antibody probes in patient cell derived assays, provide biomarker and phenotypic read outs in more disease relevant context.

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• RRID-Legacy
• 6 years ago - by Anonymous

Shared facility provides space for culturing human induced plurupotent stem cells on second floor of Porter Biosciences. Provides biosafety cabinets,CO2 and variable oxygen control incubators, inverted phase contrast microscopes, and sterile dissection hood equipped with dissecting microscope and heated stage,inverted fluorescence microscopes with live-cell time-lapse capabilities, centrifuges, liquid nitrogen cryostorage space, refrigerators, freezers, water baths, dedicated bioengineering space, and viral expression core. Routine mycoplasma testing is performed in-house and karyotyping services are carried out via contract.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth