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Software implementation of unified Java library for accessing common file formats, such as SAM and VCF, used for high-throughput sequencing data. There are also an number of useful utilities for manipulating HTS data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool as splice aware RNA-seq mapper for long reads produced by Pacific Biosciences and Oxford Nanopore devices

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software repository implements the custom CRAM codecs used for "EXTERNAL" block types.Custom compression for CRAM custom algorithm written to compress the BAM file format for DNA sequencing data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for demultiplexing Illumina NGS data. Reports inconsistencies between the raw data and the Sample Sheet, checks for duplicates of indices/ index combinations in the latter and removes unwanted characters from it. Creates an IDeFIX_Report.csv containing the indices/ index combinations from the raw data and their abundance as well as their count in the Sample Sheet and the corresponding Index ID(s).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool as time efficient progressive Multiple Sequence Alignment algorithm. Sequence distance estimation step is determined by the natural grammar present in nucleotide and amino acid sequences.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software advanced DICOM viewer and dicomizer that can also be used to convert png, jpeg, bmp, pdf, tiff to DICOM files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library for handling sequence graphs in Python.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software to build Electronic Medical Record in multiple languages to assist and improve longitudinal care specifically in ambulatory settings.Useful to anyone documenting the health of patients including,doctors, physical therapists, occupational therapists,acupuncturists, nurses, psychologists.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software genomic C++ library of reusable code for bioinformatics projects.Provides core collection of data structures, trying to avoid unnecessary code dependencies of other heavy libraries, while minimizing build time.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

GDCM includes file format definition and network communications protocol, both of which should be extended to provide full set of tools for researcher or small medical imaging vendor to interface with existing medical database.Implementation of DICOM standard designed to be open source so that researchers may access clinical data directly.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software toolkit for performing set operations - union, intersection and complement on k-mer lists.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for reading and writing data stored by some versions of 'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', and for reading and writing some 'dBase' files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software genome analysis toolbox with de-Bruijn graph. Library dedicated to genome assembly and analysis.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C++ library for accessing Oxford Nanopore Technologies sequencing data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open Source software library for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source, multiplatform, universal viewer, annotator and toolbox intended for time-series storage files like EEG, EMG, ECG, BioImpedance, etc.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for filtering long reads by quality.Can take set of long reads and produce smaller, better subset. Uses both read length and read identity when choosing which reads pass the filter.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package for Bayesian tree inference. Used for large-scale analyses on computer clusters.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Softwaare alignment free comparison tool for phylogenetic analysis and text comparison. Can be applied to nucleotide sequences, complete genomes, proteomes and for text comparison.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source C++ library and application for contact network epidemiology. Application programming interface that models the spread of infectious disease in population and generates and manipulates networks of nodes and edges.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth