Curator Dashboard

Software cross-platform C++ library for loading multimodal, multi-rate signals stored in XDF files. Used in biosignal viewing application SigViewer and the LSL application XDFStreamer. Can also be integrated into other C++ applications.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool as kmer-based error correction method for whole genome sequencing data. Lighter uses sampling rather than counting to obtain set of kmers that are likely from the genome. Using this information, Lighter can correct the reads containing sequence errors.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C++ thread pool library.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library as set of classes for creating statistical genetic programs.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Functions available from this module select the top n elements from a list using several common orderings and custom key extraction procedures.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C++ htslib/bwa-mem/fermi interface for interrogating sequence data

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library used by other RDP tools.TaxonomyTree building and traversal utility classes.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

SIMD Smith-Waterman C/C++ library for use in genomic applications. SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C++11 library for next-gen sequence quality control and assessment.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library that exports C++ mmCIF accessors to Python.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software core library and API of the Medical Image NetCDF toolkit.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software reference library for Image Cytometry Standard, an open standard for writing images of any dimensionality and data type to file, together with associated information regarding the recording equipment or recorded subject.Image Cytometry Standard file reading and writing.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software repository contains java code for NeXML processing.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C library with bioinformatic focus optimised for speed and clean API.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package provides low-level interface to the primer3 and epcr binary executables and supplies methods to return the results. Because primer3 and e-PCR are only available for Unix-like operating systems, Bio-PrimerDesigner offers the ability to accessing the primer3 binary via a remote server. Local installations of primer3 or e-PCR on Unix hosts are also supported.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software toolkit for gray scale medical image analysis. Provides combination of command line tools, plug-ins, and libraries that make it possible to run image processing tasks interactively in command shell and prototype algorithms as shell scripts. MIA is build around a plug-in structure that makes it easy to add functionality without compromising the original code base, and it makes use of wide variety of external libraries that provide additional functionality.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C++ class library for interpreting data files in NEXUS format. NEXUS Class Library software package is collection of C++ classes designed to simplify interpreting data files written in the NEXUS format used by many computer programs for phylogenetic analyses.NEXUS format allows different programs to share the same data files, even though none of the programs can interpret all of the data stored.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library that implements lightweight suffix array construction algorithm. Provides C API to construct suffix array and Burrows-Wheeler transformed string from given string over constant size alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1) bytes of memory space, where n is the length of the string.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C/C++ (and Python) library for sequence alignment using edit (Levenshtein) distance.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software collection of data structures and algorithms. Contains I/O classes (single byte and UTF-8), bitio classes (input, output and various forms of bit level manipulation), text indexing classes (suffix and LCP array, fulltext and minute (FM), ...), BAM sequence alignment files input/output (simple and collating) and many lower level support classes.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth