Curator Dashboard

Software toolbox to fit psychometric functions and to test hypotheses about psychometric data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library for sparse, compressed, binary persistent storage format used to store genomic interaction data, such as Hi-C contact matrices.Scalable storage for Hi-C data and other genomically labeled arrays.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software provides command line interface and Python API for working with Biological Observation Matrix files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python library for analysis of genomic sequence data. Framework for novel probabilistic analyses of biological sequences, devising workflows, and generating publication quality graphics.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software application for efficient comparison of genomic intervals in Python.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software application for perpendicular line scanning fluorescence correlation spectroscopy.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for aligning sequences to template alignment.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source Python-based optimization modeling language with diverse set of optimization capabilities.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software airr reference library provides basic functions and classes for interacting with AIRR Community Data Representation Standards, including tools for read, write and validation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source Python software package designed to perform azimuthal integration and, correspondingly, two-dimensional regrouping on area-detector frames for small- and wide-angle X-ray scattering experiments.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software application to compute metrics and generate interactive QC plots for Oxford Nanopore technologies sequencing data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool implementing novel indexing data structure for compacted de Bruijn graph and colored compacted de Bruijn graph.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for selecting target specific peptide candidates directly from given proteome sequence data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library for coding psychology experiments in Python.Supports presentation of both visual and auditory stimuli, and supports both manual and sound input as responses.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tools for creating the sequence-to-structure alignment database PSSH2.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python package for parsing, validating, compiling, and converting networks encoded in Biological Expression Language.Package consists of network data container, parser and validator, network database manager, data converter and network visualizer. Computational framework for Biological Expression Language. Used to pars BEL documents, validate their semantics, and facilitate data interchange between common formats and database systems like JSON, CSV, Excel, SQL, CX, and Neo4J.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool that identifies interacting residues from sequence alone. Developed using transient protein�protein interfaces from complexes of experimentally known 3D structures.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Perl application for quality control and data preprocessing of genomic and metagenomic datasets. Used to filter, reformat, or trim genomic and metagenomic sequence data. Generates summary statistics of sequences in graphical and tabular format.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool to detect orthologous genes within different species. Stand-alone tool for large datasets for orthology analysis.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth